On Mar 28, 2012, at 10:53 AM, Alexander Hansen wrote: > On 3/28/12 10:40 AM, Alexander Hansen wrote: >> On 3/28/12 10:10 AM, Roy Mendelssohn wrote: >>> Hi All: >>> >>> In trying to build mayavi, I ran into problems with building vtk58. >>> I tried installing vtk58 separately, and it just hangs - I can't >>> really give you the error message, just the point where it hangs - >>> and doesn't budge. >>> >>> Basic info - OS X 10.7.3. Have the latest XCode that was just released. >>> >>> cc --version >>> Apple clang version 3.1 (tags/Apple/clang-318.0.54) (based on LLVM >>> 3.1svn) >>> Target: x86_64-apple-darwin11.3.0 >>> Thread model: posix >>> >>> gcc --version >>> i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. >>> build 5658) (LLVM build 2336.9.00) >>> Copyright (C) 2007 Free Software Foundation, Inc. >>> This is free software; see the source for copying conditions. There >>> is NO >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >>> PURPOSE. >>> >>> fink --version >>> Package manager version: 0.32.4.1 >>> Distribution version: selfupdate-rsync Wed Mar 28 10:05:54 2012, >>> 10.7, x86_64 >>> Trees: local/main stable/main >>> >>> Copyright (c) 2001 Christoph Pfisterer >>> Copyright (c) 2001-2012 The Fink Package Manager Team >>> This program is distributed in the hope that it will be useful, >>> but WITHOUT ANY WARRANTY; without even the implied warranty of >>> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the >>> GNU General Public License for more details. >>> >>> Below is the output leading up to where it hangs - the last line is >>> where (it doesn't move from 84%). >>> >>> Thanks for any help. >>> >>> -Roy M. >>> >>> >>> 1 warning generated. >>> Linking CXX shared library ../bin/libvtkChartsTCL.dylib >>> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Charts&& /sw/bin/cmake >>> -E cmake_link_script CMakeFiles/vtkChartsTCL.dir/link.txt --verbose=1 >>> /sw/var/lib/fink/path-prefix-clang/c++ -g -dynamiclib >>> -Wl,-headerpad_max_install_names -L/sw/lib -compatibility_version >>> 5.8.0 -current_version 5.8.0 -o ../bin/libvtkChartsTCL.5.8.0.dylib >>> -install_name /sw/lib/vtk58/libvtkChartsTCL.5.8.dylib >>> CMakeFiles/vtkChartsTCL.dir/vtkAbstractContextItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkAxisTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkBlockItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkBrushTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkChartTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkChartLegendTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkChartHistogram2DTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkChartParallelCoordinatesTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkChartXYTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkChartPieTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkColorLegendTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPlotPieTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkColorSeriesTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkColorTransferFunctionItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkColorTransferControlPointsItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkCompositeControlPointsItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkCompositeTransferFunctionItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkContext2DTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkContextActorTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkContextClipTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkContextDevice2DTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkContextInteractorStyleTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkContextItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkContextMapper2DTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkContextSceneTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkContextTransformTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkContextViewTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkControlPointsItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkImageItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkLookupTableItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPenTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPiecewiseControlPointsItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPiecewiseFunctionItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPlotTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPlotBarTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPlotGridTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPlotHistogram2DTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPlotLineTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPlotStackedTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPlotParallelCoordinatesTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkPlotPointsTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkScalarsToColorsItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkTooltipItemTcl.cxx.o >>> CMakeFiles/vtkChartsTCL.dir/vtkChartsTCLInit.cxx.o >>> ../bin/libvtkCharts.5.8.0.dylib ../bin/libvtkViewsTCL.5.8.0.dylib >>> /sw/lib/libtk.dylib /sw/lib/libtcl.dylib -lm >>> ../bin/libvtkViews.5.8.0.dylib ../bin/libvtkInfovisTCL.5.8.0.dylib >>> ../bin/libvtkInfovis.5.8.0.dylib ../bin/libvtkWidgetsTCL.5.8.0.dylib >>> ../bin/libvtkWidgets.5.8.0.dylib >>> ../bin/libvtkVolumeRendering.5.8.0.dylib >>> ../bin/libvtkHybridTCL.5.8.0.dylib >>> ../bin/libvtkRenderingTCL.5.8.0.dylib /sw/lib/libtk.dylib >>> ../bin/libvtkGraphicsTCL.5.8.0.dylib >>> ../bin/libvtkImagingTCL.5.8.0.dylib /usr/X11R6/lib/libSM.dylib >>> /usr/X11R6/lib/libICE.dylib /usr/X11R6/lib/libX11.dylib >>> /usr/X11R6/lib/libXext.dylib ../bin/libvtkHybrid.5.8.0.dylib >>> ../bin/libvtkParallel.5.8.0.dylib ../bin/libvtkRendering.5.8.0.dylib >>> ../bin/libvtkGraphics.5.8.0.dylib ../bin/libvtkImaging.5.8.0.dylib >>> ../bin/libvtkIOTCL.5.8.0.dylib ../bin/libvtkIO.5.8.0.dylib >>> ../bin/libvtkFilteringTCL.5.8.0.dylib >>> ../bin/libvtkFiltering.5.8.0.dylib ../bin/libvtkCommonTCL.5.8.0.dylib >>> /sw/lib/libtcl.dylib -lm ../bin/libvtkCommon.5.8.0.dylib >>> ../bin/libvtksys.5.8.0.dylib -lm >>> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Charts&& /sw/bin/cmake >>> -E cmake_symlink_library ../bin/libvtkChartsTCL.5.8.0.dylib >>> ../bin/libvtkChartsTCL.5.8.dylib ../bin/libvtkChartsTCL.dylib >>> /sw/bin/cmake -E cmake_progress_report >>> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/CMakeFiles 6 >>> [ 84%] Built target vtkChartsTCL >>> >>> >>> >> Unfortunately, I didn't reproduce the error--it failed at 7% rather >> than 84% for me, without getting tuck: >> >> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Common && /sw/bin/cmake >> -E touch >> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Common/vtkCommonHierarchy.target >> /sw/bin/cmake -E cmake_progress_report >> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/CMakeFiles 7 >> [ 7%] Built target vtkCommon >> make: *** [all] Error 2 >> <snip> >> Package manager version: 0.32.4.1 >> Distribution version: selfupdate-cvs Tue Mar 27 10:56:28 2012, 10.7, >> x86_64 >> Trees: local/main stable/main local/injected >> Xcode: 4.3.2 >> Max. Fink build jobs: 4 >> >> $ sysctl hw.model >> hw.model: MacBookPro8,1 >> >> I'll try my own advice and change the number of build jobs next :-) . >> I'll also cc the maintainer. >> > I found the following in the setup stage for the build: > > perl -pi.bak -e 's|/usr/local|/sw|g' Wrapping/Tcl/vtkbase/vtkbase.tcl > Can't open Wrapping/Tcl/vtkbase/vtkbase.tcl: No such file or directory. > > tar -tvf /sw/src/vtk-5.8.0.tar.gz | grep vtkbase.tcl > -rw-r--r-- kitware/kitware 3486 2011-08-24 06:37 > VTK/Wrapping/Tcl/vtkbase/vtkbase.tcl.in > > I also found the _real_ error in my case, which is the same regardless > of the number of build jobs (and much easier to find when setting the > number of jobs to 1): > > Linking CXX shared library ../../../bin/libMapReduceMPI.dylib > cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Utilities/mrmpi/src && > /sw/bin/cmake -E cmake_link_script CMakeFiles/MapReduceMPI.dir/link.txt > --verbose=1 > /sw/var/lib/fink/path-prefix-clang/c++ -g -dynamiclib > -Wl,-headerpad_max_install_names -L/sw/lib -compatibility_version > 5.8.0 -current_version 5.8.0 -o ../../../bin/libMapReduceMPI.5.8.0.dylib > -install_name /sw/lib/vtk58/libMapReduceMPI.5.8.dylib > CMakeFiles/MapReduceMPI.dir/mapreduce.cpp.o > CMakeFiles/MapReduceMPI.dir/keyvalue.cpp.o > CMakeFiles/MapReduceMPI.dir/keymultivalue.cpp.o > CMakeFiles/MapReduceMPI.dir/irregular.cpp.o > CMakeFiles/MapReduceMPI.dir/hash.cpp.o > CMakeFiles/MapReduceMPI.dir/memory.cpp.o > CMakeFiles/MapReduceMPI.dir/error.cpp.o > ../../../bin/libmpistubs.5.8.0.dylib ../../../bin/libvtksys.5.8.0.dylib > /sw/bin/cmake -E cmake_progress_report > /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/CMakeFiles > [ 5%] Undefined symbols for architecture x86_64: > "_MPI_Type_contiguous", referenced from: > MPI::Datatype::Create_contiguous(int) const in mapreduce.cpp.o > ... > > I do have openmpi installed: > > $ fink list -it openmpi | cut -f1-3 > i openmpi 1.5.4-1 > i openmpi-ext-oct361 1.0.2-102 > i openmpi-shlibs 1.5.4-1 > > vtk58 carries a BuildConflicts: openmpi-dev, but there's no openmpi-dev > on Lion due to the use of a newer and differently-factored package > scheme there: > > $ fink list openmpi-dev > Information about 4592 packages read in 1 seconds. > > I'll try removing openmpi to see if I reproduce Roy's error at that > point, and I'll follow up. >
I do not have openmpi installed at all - so I did not hit that. Also you may hit some conflicts with tetex-base and ghostscript, depending on what you have installed and what you choose (or maybe that was from mayavi?) -Roy ********************** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ********************** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center 1352 Lighthouse Avenue Pacific Grove, CA 93950-2097 e-mail: roy.mendelss...@noaa.gov (Note new e-mail address) voice: (831)-648-9029 fax: (831)-648-8440 www: http://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." "From those who have been given much, much will be expected" "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. ------------------------------------------------------------------------------ This SF email is sponsosred by: Try Windows Azure free for 90 days Click Here http://p.sf.net/sfu/sfd2d-msazure _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
