On 3/28/2012 3:09 PM, Alexander Hansen wrote: > On 3/28/12 10:58 AM, Roy Mendelssohn wrote: >> On Mar 28, 2012, at 10:53 AM, Alexander Hansen wrote: >> >>> On 3/28/12 10:40 AM, Alexander Hansen wrote: >>>> On 3/28/12 10:10 AM, Roy Mendelssohn wrote: >>>>> Hi All: >>>>> >>>>> In trying to build mayavi, I ran into problems with building vtk58. >>>>> I tried installing vtk58 separately, and it just hangs - I can't >>>>> really give you the error message, just the point where it hangs - >>>>> and doesn't budge. >>>>> >>>>> Basic info - OS X 10.7.3. Have the latest XCode that was just released. >>>>> >>>>> cc --version >>>>> Apple clang version 3.1 (tags/Apple/clang-318.0.54) (based on LLVM >>>>> 3.1svn) >>>>> Target: x86_64-apple-darwin11.3.0 >>>>> Thread model: posix >>>>> >>>>> gcc --version >>>>> i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. >>>>> build 5658) (LLVM build 2336.9.00) >>>>> Copyright (C) 2007 Free Software Foundation, Inc. >>>>> This is free software; see the source for copying conditions. There >>>>> is NO >>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >>>>> PURPOSE. >>>>> >>>>> fink --version >>>>> Package manager version: 0.32.4.1 >>>>> Distribution version: selfupdate-rsync Wed Mar 28 10:05:54 2012, >>>>> 10.7, x86_64 >>>>> Trees: local/main stable/main >>>>> >>>>> Copyright (c) 2001 Christoph Pfisterer >>>>> Copyright (c) 2001-2012 The Fink Package Manager Team >>>>> This program is distributed in the hope that it will be useful, >>>>> but WITHOUT ANY WARRANTY; without even the implied warranty of >>>>> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the >>>>> GNU General Public License for more details. >>>>> >>>>> Below is the output leading up to where it hangs - the last line is >>>>> where (it doesn't move from 84%). >>>>> >>>>> Thanks for any help. >>>>> >>>>> -Roy M. >>>>> >>>>> >>>>> 1 warning generated. >>>>> Linking CXX shared library ../bin/libvtkChartsTCL.dylib >>>>> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Charts&& /sw/bin/cmake >>>>> -E cmake_link_script CMakeFiles/vtkChartsTCL.dir/link.txt --verbose=1 >>>>> /sw/var/lib/fink/path-prefix-clang/c++ -g -dynamiclib >>>>> -Wl,-headerpad_max_install_names -L/sw/lib -compatibility_version >>>>> 5.8.0 -current_version 5.8.0 -o ../bin/libvtkChartsTCL.5.8.0.dylib >>>>> -install_name /sw/lib/vtk58/libvtkChartsTCL.5.8.dylib >>>>> CMakeFiles/vtkChartsTCL.dir/vtkAbstractContextItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkAxisTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkBlockItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkBrushTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkChartTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkChartLegendTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkChartHistogram2DTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkChartParallelCoordinatesTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkChartXYTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkChartPieTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkColorLegendTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotPieTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkColorSeriesTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkColorTransferFunctionItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkColorTransferControlPointsItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkCompositeControlPointsItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkCompositeTransferFunctionItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkContext2DTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkContextActorTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkContextClipTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkContextDevice2DTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkContextInteractorStyleTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkContextItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkContextMapper2DTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkContextSceneTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkContextTransformTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkContextViewTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkControlPointsItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkImageItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkLookupTableItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPenTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPiecewiseControlPointsItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPiecewiseFunctionItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotBarTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotGridTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotHistogram2DTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotLineTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotStackedTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotParallelCoordinatesTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkPlotPointsTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkScalarsToColorsItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkTooltipItemTcl.cxx.o >>>>> CMakeFiles/vtkChartsTCL.dir/vtkChartsTCLInit.cxx.o >>>>> ../bin/libvtkCharts.5.8.0.dylib ../bin/libvtkViewsTCL.5.8.0.dylib >>>>> /sw/lib/libtk.dylib /sw/lib/libtcl.dylib -lm >>>>> ../bin/libvtkViews.5.8.0.dylib ../bin/libvtkInfovisTCL.5.8.0.dylib >>>>> ../bin/libvtkInfovis.5.8.0.dylib ../bin/libvtkWidgetsTCL.5.8.0.dylib >>>>> ../bin/libvtkWidgets.5.8.0.dylib >>>>> ../bin/libvtkVolumeRendering.5.8.0.dylib >>>>> ../bin/libvtkHybridTCL.5.8.0.dylib >>>>> ../bin/libvtkRenderingTCL.5.8.0.dylib /sw/lib/libtk.dylib >>>>> ../bin/libvtkGraphicsTCL.5.8.0.dylib >>>>> ../bin/libvtkImagingTCL.5.8.0.dylib /usr/X11R6/lib/libSM.dylib >>>>> /usr/X11R6/lib/libICE.dylib /usr/X11R6/lib/libX11.dylib >>>>> /usr/X11R6/lib/libXext.dylib ../bin/libvtkHybrid.5.8.0.dylib >>>>> ../bin/libvtkParallel.5.8.0.dylib ../bin/libvtkRendering.5.8.0.dylib >>>>> ../bin/libvtkGraphics.5.8.0.dylib ../bin/libvtkImaging.5.8.0.dylib >>>>> ../bin/libvtkIOTCL.5.8.0.dylib ../bin/libvtkIO.5.8.0.dylib >>>>> ../bin/libvtkFilteringTCL.5.8.0.dylib >>>>> ../bin/libvtkFiltering.5.8.0.dylib ../bin/libvtkCommonTCL.5.8.0.dylib >>>>> /sw/lib/libtcl.dylib -lm ../bin/libvtkCommon.5.8.0.dylib >>>>> ../bin/libvtksys.5.8.0.dylib -lm >>>>> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Charts&& /sw/bin/cmake >>>>> -E cmake_symlink_library ../bin/libvtkChartsTCL.5.8.0.dylib >>>>> ../bin/libvtkChartsTCL.5.8.dylib ../bin/libvtkChartsTCL.dylib >>>>> /sw/bin/cmake -E cmake_progress_report >>>>> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/CMakeFiles 6 >>>>> [ 84%] Built target vtkChartsTCL >>>>> >>>>> >>>>> >>>> Unfortunately, I didn't reproduce the error--it failed at 7% rather >>>> than 84% for me, without getting tuck: >>>> >>>> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Common&& /sw/bin/cmake >>>> -E touch >>>> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Common/vtkCommonHierarchy.target >>>> /sw/bin/cmake -E cmake_progress_report >>>> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/CMakeFiles 7 >>>> [ 7%] Built target vtkCommon >>>> make: *** [all] Error 2 >>>> <snip> >>>> Package manager version: 0.32.4.1 >>>> Distribution version: selfupdate-cvs Tue Mar 27 10:56:28 2012, 10.7, >>>> x86_64 >>>> Trees: local/main stable/main local/injected >>>> Xcode: 4.3.2 >>>> Max. Fink build jobs: 4 >>>> >>>> $ sysctl hw.model >>>> hw.model: MacBookPro8,1 >>>> >>>> I'll try my own advice and change the number of build jobs next :-) . >>>> I'll also cc the maintainer. >>>> >>> I found the following in the setup stage for the build: >>> >>> perl -pi.bak -e 's|/usr/local|/sw|g' Wrapping/Tcl/vtkbase/vtkbase.tcl >>> Can't open Wrapping/Tcl/vtkbase/vtkbase.tcl: No such file or directory. >>> >>> tar -tvf /sw/src/vtk-5.8.0.tar.gz | grep vtkbase.tcl >>> -rw-r--r-- kitware/kitware 3486 2011-08-24 06:37 >>> VTK/Wrapping/Tcl/vtkbase/vtkbase.tcl.in >>> >>> I also found the _real_ error in my case, which is the same regardless >>> of the number of build jobs (and much easier to find when setting the >>> number of jobs to 1): >>> >>> Linking CXX shared library ../../../bin/libMapReduceMPI.dylib >>> cd /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/Utilities/mrmpi/src&& >>> /sw/bin/cmake -E cmake_link_script CMakeFiles/MapReduceMPI.dir/link.txt >>> --verbose=1 >>> /sw/var/lib/fink/path-prefix-clang/c++ -g -dynamiclib >>> -Wl,-headerpad_max_install_names -L/sw/lib -compatibility_version >>> 5.8.0 -current_version 5.8.0 -o ../../../bin/libMapReduceMPI.5.8.0.dylib >>> -install_name /sw/lib/vtk58/libMapReduceMPI.5.8.dylib >>> CMakeFiles/MapReduceMPI.dir/mapreduce.cpp.o >>> CMakeFiles/MapReduceMPI.dir/keyvalue.cpp.o >>> CMakeFiles/MapReduceMPI.dir/keymultivalue.cpp.o >>> CMakeFiles/MapReduceMPI.dir/irregular.cpp.o >>> CMakeFiles/MapReduceMPI.dir/hash.cpp.o >>> CMakeFiles/MapReduceMPI.dir/memory.cpp.o >>> CMakeFiles/MapReduceMPI.dir/error.cpp.o >>> ../../../bin/libmpistubs.5.8.0.dylib ../../../bin/libvtksys.5.8.0.dylib >>> /sw/bin/cmake -E cmake_progress_report >>> /sw/src/fink.build/vtk58-5.8.0-1/VTKBuild/CMakeFiles >>> [ 5%] Undefined symbols for architecture x86_64: >>> "_MPI_Type_contiguous", referenced from: >>> MPI::Datatype::Create_contiguous(int) const in mapreduce.cpp.o >>> ... >>> >>> I do have openmpi installed: >>> >>> $ fink list -it openmpi | cut -f1-3 >>> i openmpi 1.5.4-1 >>> i openmpi-ext-oct361 1.0.2-102 >>> i openmpi-shlibs 1.5.4-1 >>> >>> vtk58 carries a BuildConflicts: openmpi-dev, but there's no openmpi-dev >>> on Lion due to the use of a newer and differently-factored package >>> scheme there: >>> >>> $ fink list openmpi-dev >>> Information about 4592 packages read in 1 seconds. >>> >>> I'll try removing openmpi to see if I reproduce Roy's error at that >>> point, and I'll follow up. >>> >> I do not have openmpi installed at all - so I did not hit that. Also you >> may hit some conflicts with tetex-base and ghostscript, depending on what >> you have installed and what you choose (or maybe that was from mayavi?) >> >> -Roy >> >> >> > Unfortunately, I wasn't able to reproduce the error. :-( The vtk58 > build proceeded to completion for me on 1 CPU. I'll try again with 4 > for completeness.
To add to the confusion, I get this failure when using Xcode-4.1 on 10.7 with a single CPU build: Linking CXX executable ../../bin/vtkpython cd /sw/build.build/vtk58-5.8.0-1/VTKBuild/Wrapping/Python && /sw/bin/cmake -E cmake_link_script CMakeFiles/vtkpython.dir/link.txt --verbose=1 /sw/var/lib/fink/path-prefix-clang/c++ -g -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib -flat_namespace -undefined suppress -u _PyMac_Error CMakeFiles/vtkpython.dir/vtkPythonAppInit.cxx.o -o ../../bin/vtkpython /sw/lib/libtk.dylib /sw/lib/libtcl.dylib -lm -lpthread /sw/lib/python2.7/config/libpython2.7.dylib ../../bin/libvtksys.5.8.0.dylib ../../bin/libvtkCommon.5.8.0.dylib ../../bin/libvtkFiltering.5.8.0.dylib ../../bin/libvtkIO.5.8.0.dylib ../../bin/libvtkGraphics.5.8.0.dylib ../../bin/libvtkImaging.5.8.0.dylib /usr/lib/libutil.dylib ../../bin/libvtkRendering.5.8.0.dylib ../../bin/libvtkVolumeRendering.5.8.0.dylib ../../bin/libvtkHybrid.5.8.0.dylib ../../bin/libvtkWidgets.5.8.0.dylib ../../bin/libvtkParallel.5.8.0.dylib ../../bin/libvtkCharts.5.8.0.dylib ../../bin/libvtkGeovis.5.8.0.dylib ../../bin/libvtkInfovis.5.8.0.dylib ../../bin/libvtkViews.5.8.0.dylib ../../bin/libvtkInfovis.5.8.0.dylib ../../bin/libvtkWidgets.5.8.0.dylib ../../bin/libvtkVolumeRendering.5.8.0.dylib ../../bin/libvtkHybrid.5.8.0.dylib ../../bin/libvtkParallel.5.8.0.dylib ../../bin/libvtkRendering.5.8.0.dylib ../../bin/libvtkIO.5.8.0.dylib ../../bin/libvtkGraphics.5.8.0.dylib ../../bin/libvtkImaging.5.8.0.dylib ../../bin/libvtkFiltering.5.8.0.dylib ../../bin/libvtkCommon.5.8.0.dylib ../../bin/libvtksys.5.8.0.dylib -lm -lm -lpthread /sw/lib/python2.7/config/libpython2.7.dylib /usr/lib/libutil.dylib ld: file not found: /sw/lib/vtk58/libvtkDICOMParser.5.8.dylib for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[2]: *** [bin/vtkpython] Error 1 make[1]: *** [Wrapping/Python/CMakeFiles/vtkpython.dir/all] Error 2 make: *** [all] Error 2 libvtkDICOMParser.5.8.dylib (real file libvtkDICOMParser.5.8.0.dylib) definitely exists in VTKBuild/bin and is built around the 3% stage, whereas this failure is in the 97% stage of the build. Hanspeter ------------------------------------------------------------------------------ This SF email is sponsosred by: Try Windows Azure free for 90 days Click Here http://p.sf.net/sfu/sfd2d-msazure _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
