Hi, I'm trying to install bioperl-run-pm5100. bioperl-pm5100 itself and the two other pre-requisities for bioperl-run install with no problem. bioperl-run dies with the error:
> Unpacking fink-buildlock-bioperl-run-pm5100-1.6.1-4 (from > .../fink-buildlock-bioperl-run-pm5100-1.6.1-4_2012.05.09-11.32.21_darwin-i386.deb) > ... > Setting up fink-buildlock-bioperl-run-pm5100-1.6.1-4 (2012.05.09-11.32.21) ... > > /sw/bin/tar --no-same-owner --no-same-permissions -xf > /sw/src/BioPerl-run-1.6.1.tar.bz2 > [ -r /sw/fink/dists/stable/main/finkinfo/libs/perlmods/bioperl-run-pm.patch ] > patch -p1 < > /sw/fink/dists/stable/main/finkinfo/libs/perlmods/bioperl-run-pm.patch > patching file Build.PL > ARCHFLAGS="" /usr/bin/arch -i386 perl5.10.0 Build.PL --install_base /sw > --install_path bin=/sw/bin --install_path lib=/sw/lib/perl5/5.10.0 > --install_path arch=/sw/lib/perl5/5.10.0/darwin-thread-multi-2level > --install_path bindoc=/sw/share/man/man1 --install_path > libdoc=/sw/share/man/man3 --install_path script=/sw/bin --destdir > /sw/src/fink.build/root-bioperl-run-pm5100-1.6.1-4 > Invalid prerequisite condition '0/processing XML > data/Bio::Tools::Run::EMBOSSacd' for XML::Twig at > /sw/lib/perl5/5.10.0/Module/Build/Base.pm line 1693. > ### execution of ARCHFLAGS="" failed, exit code 9 > Removing runtime build-lock... > Removing build-lock package... > /sw/bin/dpkg-lockwait -r fink-buildlock-bioperl-run-pm5100-1.6.1-4 > (Reading database ... 16020 files and directories currently installed.) > Removing fink-buildlock-bioperl-run-pm5100-1.6.1-4 ... > Failed: phase compiling: bioperl-run-pm5100-1.6.1-4 failed This is on a Mac Pro running 10.6.8 and the following: Package manager version: 0.32.6 Distribution version: selfupdate-rsync Wed May 9 10:14:52 2012, 10.6, i386 Trees: local/main stable/main Xcode: 3.2.6 Max. Fink build jobs: 8 I've tried in clean installs of fink both for mostly 32-bit and all 64-bit with the same error. I notice that the package doesn't appear to have a maintainer at the moment. Anyone have any ideas as to how I can fix this? Regards, Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail message is confidential and for use by the addressee only. If the message is received by anyone other than the addressee, please return the message to the sender by replying to it and then delete the message from your computer and network. ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
