On 11/24/13 2:01 PM, Alexander Hansen wrote:
> On 11/24/13 1:57 PM, marieme imene wrote:
>> Hello and thanks for caring,
>> I'm using Mac os Lion 10.7.5. This is what I got when I tried the
>> commands:
>>
>> Scanning package description files..........
>> Information about 8752 packages read in 13 seconds.
>> The following package will be rebuilt:
>>   optim-atlas-oct362
>> Setting runtime build-lock...
>> dpkg-deb -b
>> /sw2/src/fink.build/root-fink-buildlock-optim-atlas-oct362-1.2.2-2
>> /sw2/src/fink.build
>> dpkg-deb : construction du paquet «
>> fink-buildlock-optim-atlas-oct362-1.2.2-2 » dans «
>> /sw2/src/fink.build/fink-buildlock-optim-atlas-oct362-1.2.2-2_2013.11.24-22.51.16_darwin-x86_64.deb
>>
>> ».
>> Installing build-lock package...
>> /sw2/bin/dpkg-lockwait -i
>> /sw2/src/fink.build/fink-buildlock-optim-atlas-oct362-1.2.2-2_2013.11.24-22.51.16_darwin-x86_64.deb
>>
>>
>> Selecting previously deselected package
>> fink-buildlock-optim-atlas-oct362-1.2.2-2.
>> (Reading database ... 54111 files and directories currently installed.)
>> Unpacking fink-buildlock-optim-atlas-oct362-1.2.2-2 (from
>> .../fink-buildlock-optim-atlas-oct362-1.2.2-2_2013.11.24-22.51.16_darwin-x86_64.deb)
>>
>> ...
>> Setting up fink-buildlock-optim-atlas-oct362-1.2.2-2
>> (2013.11.24-22.51.16) ...
>>
>> env LANG=C LC_ALL=C /sw2/bin/tar  --no-same-owner --no-same-permissions
>> -xf /sw2/src/optim-1.2.2.tar.gz
>> /tmp/fink.r6xdF
>> #!/bin/sh -ev
>> export OCTAVE=/sw2/bin/octave-3.6.2
>> pkgsrc=optim-1.2.2
>>
>> ##### Invariant stuff begins here #####
>> /sw2/share/fink-octave-scripts/octave-forge-patch.sh optim 1.2.2 3.6.2
>> /sw2/src/fink.build/optim-atlas-oct362-1.2.2-2/optim-1.2.2
>> /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2/sw2 $pkgsrc
>> #!/bin/sh -ev
>> if [ $UID -ne 0 ]
>> then
>>          echo "$1 cannot be built with --build-as-nobody"
>>          exit 1
>> fi
>> octvers=$3
>> subst1="s,@PKG@,$1,g"
>> subst2="s,@PKGVERS@,$2,g"
>> subst3="s,@OCTVERS@,$octvers,g"
>> subst4="s,@BUILDDIR@,$4,g"
>> subst5="s,@INSTDIR@,$5,g"
>> subst6="s,@PKGSRC@,$6,g"
>> for scriptfile in octave-forge-install.sh octave-forge-inst \
>>                                    octave-forge-postinst.sh
>> octave-forge-postinst \
>>                                    octave-forge-prerm.sh
>> octave-forge-prerm; do
>>          sed -e $subst1 -e $subst2 -e $subst3 -e $subst4 -e $subst5
>> /sw2/share/fink-octave-scripts/$scriptfile.in > $scriptfile
>>          chmod a+x $scriptfile
>> done
>> if [[ "$octvers" > "3.4.0" ]] ; then
>>
>> oc_shell_script="/sw2/share/fink-octave-scripts/octave-forge-compile-3.4.3.sh.in"
>>
>>
>>
>> oc_oct_script="/sw2/share/fink-octave-scripts/octave-forge-comp-3.4.3.in"
>> else
>>
>> oc_shell_script="/sw2/share/fink-octave-scripts/octave-forge-compile-3.0.5.sh.in"
>>
>>
>>
>> oc_oct_script="/sw2/share/fink-octave-scripts/octave-forge-comp-3.0.5.in"
>> fi
>> sed -e $subst1 -e $subst3 -e $subst4 -e $subst6 $oc_shell_script >
>> octave-forge-compile.sh
>> sed -e $subst1 -e $subst3 -e $subst6 $oc_oct_script > octave-forge-comp
>> sed -e $subst3 -e $subst4
>> /sw2/share/fink-octave-scripts/genmkoctfile.sh.in > genmkoctfile.sh
>> chmod a+x octave-forge-comp*
>> chmod a+x genmkoctfile.sh
>> ./octave-forge-compile.sh
>> #!/bin/sh -ev
>> # repack tarball, since octave-3.4.0+ appears not to want to install
>> # from directories
>> cd ..
>> tar -cf optim.tar optim-1.2.2
>> mkdir -p bld/share/octave/3.6.2/packages bld/lib/octave/3.6.2/packages
>> `which xvfb-run`
>> /sw2/src/fink.build/optim-atlas-oct362-1.2.2-2/optim-1.2.2/octave-forge-comp
>>
>>
>> which xvfb-run
>> GNU Octave, version 3.6.2
>> Copyright (C) 2012 John W. Eaton and others.
>> This is free software; see the source code for copying conditions.
>> There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or
>> FITNESS FOR A PARTICULAR PURPOSE.  For details, type `warranty'.
>>
>> Octave was configured for "x86_64-apple-darwin".
>>
>> Additional information about Octave is available at
>> http://www.octave.org.
>>
>> Please contribute if you find this software useful.
>> For more information, visit http://www.octave.org/help-wanted.html
>>
>> Read http://www.octave.org/bugs.html to learn how to submit bug reports.
>>
>> For information about changes from previous versions, type `news'.
>>
>> warning: X11 DISPLAY environment variable not set
>> executing commands from /sw2/share/octave/site/m/startup/octaverc ...
>> done.
>> executing commands from /sw2/share/octave/3.6.2/m/startup/octaverc ...
>> done.
>>
>> ans =
>> /sw2/src/fink.build/optim-atlas-oct362-1.2.2-2/bld/share/octave/3.6.2/packages
>>
>>
>> mkdir (/var/tmp/oct-pFsBIr)
>> untar (./optim.tar, /var/tmp/oct-pFsBIr)
>> mkoctfile: stripping disabled on this platform
>> mkoctfile: stripping disabled on this platform
>> mkoctfile: stripping disabled on this platform
>> mkoctfile: stripping disabled on this platform
>> samin.cc:477:1: warning: control may reach end of non-void function
>> [-Wreturn-type]
>> }
>> ^
>> 1 warning generated.
>> mkoctfile: stripping disabled on this platform
>> LFLAGS="-L/sw2/lib/octave/3.6.2 -L/sw2/lib -ltatlas -ltatlas"
>> /sw2/bin/mkoctfile-3.6.2 -s __bfgsmin.cc
>> LFLAGS="-L/sw2/lib/octave/3.6.2 -L/sw2/lib -ltatlas -ltatlas"
>> /sw2/bin/mkoctfile-3.6.2 -s numgradient.cc
>> LFLAGS="-L/sw2/lib/octave/3.6.2 -L/sw2/lib -ltatlas -ltatlas"
>> /sw2/bin/mkoctfile-3.6.2 -s numhessian.cc
>> LFLAGS="-L/sw2/lib/octave/3.6.2 -L/sw2/lib -ltatlas -ltatlas"
>> /sw2/bin/mkoctfile-3.6.2 -s samin.cc
>> LFLAGS="-L/sw2/lib/octave/3.6.2 -L/sw2/lib -ltatlas -ltatlas"
>> /sw2/bin/mkoctfile-3.6.2 -s __disna_optim__.cc
>> copyfile /var/tmp/oct-pFsBIr/optim-1.2.2/src/__bfgsmin.oct
>> /var/tmp/oct-pFsBIr/optim-1.2.2/src/__disna_optim__.oct
>> /var/tmp/oct-pFsBIr/optim-1.2.2/src/numgradient.oct
>> /var/tmp/oct-pFsBIr/optim-1.2.2/src/numhessian.oct
>> /var/tmp/oct-pFsBIr/optim-1.2.2/src/samin.oct
>> /var/tmp/oct-pFsBIr/optim-1.2.2/inst/x86_64-apple-darwin-api-v48+
>> warning: gen_doc_cache: unusable help text found in file 'test_d2_min_1'
>> warning: gen_doc_cache: unusable help text found in file 'test_d2_min_2'
>> warning: gen_doc_cache: unusable help text found in file 'test_d2_min_3'
>> /var/tmp/octave-help-hVcd9z:64: must be after `@deftypefn' to use
>> `@deftypefnx'
>> /var/tmp/octave-help-hVcd9z:72: must be after `@deftypefn' to use
>> `@deftypefnx'
>> /var/tmp/octave-help-hVcd9z:85: must be after `@deftypefn' to use
>> `@deftypefnx'
>> For information about changes from previous versions of the optim
>> package, run 'news ("optim")'.
>> /bin/rm -rf /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2
>> /bin/mkdir -p /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2/sw2
>> /bin/mkdir -p /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2/DEBIAN
>> /usr/sbin/chown -R root:admin
>> /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2
>> ./octave-forge-install.sh
>> #!/bin/sh -ev
>> cd /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2/sw2
>> cp -r
>> /sw2/src/fink.build/optim-atlas-oct362-1.2.2-2/optim-1.2.2/../bld/{share,lib}
>>
>> .
>> `which xvfb-run`
>> /sw2/src/fink.build/optim-atlas-oct362-1.2.2-2/optim-1.2.2/octave-forge-inst
>>
>>
>> which xvfb-run
>> warning: X11 DISPLAY environment variable not set
>> mv share/octave/3.6.2/octave_packages
>> share/octave/3.6.2/packages/optim-1.2.2/.
>> mkdir -p share/octave/3.6.2/optim
>> # copy postinst/prerm scripts
>> cp
>> /sw2/src/fink.build/optim-atlas-oct362-1.2.2-2/optim-1.2.2/octave-forge-{prerm,postinst,prerm.sh,postinst.sh}
>>
>> /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2/sw2/share/octave/3.6.2/optim
>>
>>
>> /bin/rm -f
>> /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2/sw2/info/dir
>> /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2/sw2/info/dir.old
>> /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2/sw2/share/info/dir
>> /sw2/src/fink.build/root-optim-atlas-oct362-1.2.2-2/sw2/share/info/dir.old
>>
>> Writing control file...
>> Writing package script postinst...
>> Writing package script prerm...
>> Writing md5sums file...
>> env LANG=C LC_ALL=C dpkg-deb -b root-optim-atlas-oct362-1.2.2-2
>> /sw2/fink/10.7/stable/main/binary-darwin-x86_64/sci
>> dpkg-deb: building package `optim-atlas-oct362' in
>> `/sw2/fink/10.7/stable/main/binary-darwin-x86_64/sci/optim-atlas-oct362_1.2.2-2_darwin-x86_64.deb'.
>>
>>
>> Removing runtime build-lock...
>> Removing build-lock package...
>> /sw2/bin/dpkg-lockwait -r fink-buildlock-optim-atlas-oct362-1.2.2-2
>> (Reading database ... 54112 files and directories currently installed.)
>> Removing fink-buildlock-optim-atlas-oct362-1.2.2-2 ...
>> Reading buildlock packages...
>> /sw2/bin/dpkg-lockwait -i
>> /sw2/fink/dists/stable/main/binary-darwin-x86_64/sci/optim-atlas-oct362_1.2.2-2_darwin-x86_64.deb
>>
>>
>> (Reading database ... 54111 files and directories currently installed.)
>> Preparing to replace optim-atlas-oct362 1.2.2-2 (using
>> .../optim-atlas-oct362_1.2.2-2_darwin-x86_64.deb) ...
>> Unregistering optim package with Octave-3.6.2...
>> Done.
>> Unpacking replacement optim-atlas-oct362 ...
>> Setting up optim-atlas-oct362 (1.2.2-2) ...
>> Registering optim package with Octave-3.6.2...Done.
>>
>> Updating the list of locally available binary packages.
>> Scanning dists/stable/main/binary-darwin-x86_64
>> Changed package:
>> dists/stable/main/binary-darwin-x86_64/sci/optim-atlas-oct362_1.2.2-2_darwin-x86_64.deb
>>
>>
>> 89-156-6-239:~ mariemeimeneelghezal$ fink install octave-atlas362
>> Information about 8752 packages read in 1 seconds.
>> Failed: no package found for specification 'octave-atlas362'!
>>
>> Thanks again!
>> Le 24 nov. 2013 à 22:51, Alexander Hansen-2 [via Fink] a écrit :
>>
>>  > fink install octave-atlas362
>>
>>
>
>
> Oh, sorry, my fault there.  I meant to have you try to run "fink install
> optim-atlas-oct362" , but the rebuild took care of that.
>
> Check your "pkg list" in octave.

Also, the output of the following two commands would be useful:

which octave

octave --version

-- 
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/

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