I gave up on this temporarily and decided to revisit this morning. Around the time the AIR 1.1 update came out, I started having issues quitting the AIR app I'm developing using Apple-Q, the ApplicaitonMenu, and the DockMenu. It seems to be related to the fact that I have other windows opened by my application, the only way I can currently quit the entire application is by closing my "Main" window, which my windowedApplication listens to and then closes. I've even tried adding a listener to the "Quit" item in the ApplicationMenu, but my handler is never catching the event when I choose that item. Other AIR apps I have installed are still working correctly, so I'm looking for the culprit here.
My application extends WindowedApplication, it is chromeless, transparent, and invisible. It spawns a MainWindow on startup, but other windows for notifications, etc, are also spawned from the application. I listen for the CLOSING event on the MainWindow and then close the application, which works fine. Mac users are just used to Apple-Q to quit and this is doing nothing currently.