URL: https://github.com/freeipa/freeipa/pull/280
Title: #280: Set explicit confdir option for global contexts

jcholast commented:
"""
You missed a few:
```
daemons/dnssec/ipa-dnskeysync-replica:124:ipalib.api.bootstrap(in_server=True, 
log=None)  # no logging to file
daemons/dnssec/ipa-dnskeysyncd:23:api.bootstrap(in_server=True, log=None)  # no 
logging to file
daemons/dnssec/ipa-ods-exporter:618:ipalib.api.bootstrap(in_server=True, 
log=None)  # no logging to file
doc/guide/wsgi.py.txt:9:env._bootstrap(context='server', log=None)
doc/guide/wsgi.py.txt:13:api.bootstrap(context='server', debug=env.debug, 
log=None) (ref:wsgi-app-bootstrap)
install/restart_scripts/renew_ra_cert:39:    api.bootstrap(in_server=True, 
context='restart')
install/tools/ipa-adtrust-install:269:    api.bootstrap(**cfg)
install/tools/ipa-ca-install:262:    api.bootstrap(in_server=True, 
ra_plugin='dogtag')
install/tools/ipa-compat-manage:105:    api.bootstrap(context='cli', 
in_server=True, debug=options.debug)
install/tools/ipa-csreplica-manage:418:    api.bootstrap(**api_env)
install/tools/ipa-dns-install:139:    api.bootstrap(**cfg)
install/tools/ipa-managed-entries:75:    api.bootstrap(context='cli', 
debug=options.debug)
install/tools/ipa-nis-manage:118:    api.bootstrap(context='cli', 
debug=options.debug, in_server=True)
install/tools/ipa-replica-manage:1512:    api.bootstrap(**api_env)
ipapython/dnssec/ldapkeydb.py:417:    ipalib.api.bootstrap(in_server=True, 
log=None)  # no logging to file
ipaserver/advise/base.py:238:        api.bootstrap(in_server=False, 
context='cli')
ipaserver/advise/base.py:240:        advise_api.bootstrap(in_server=False, 
context='cli')
ipaserver/install/ipa_cacert_manage.py:99:        api.bootstrap(in_server=True)
ipaserver/install/ipa_kra_install.py:80:        api.bootstrap(in_server=True)
ipaserver/install/ipa_otptoken_import.py:512:        
api.bootstrap(in_server=True)
ipaserver/install/ipa_replica_prepare.py:183:        
api.bootstrap(in_server=True)
ipaserver/install/ipa_server_certinstall.py:102:        
api.bootstrap(in_server=True)
ipatests/test_ipaserver/test_ldap.py:114:        myapi.bootstrap(context='cli', 
in_server=True)
ipatests/test_ipaserver/test_serverroles.py:472:    
test_api.bootstrap(in_server=True, ldap_uri=api.env.ldap_uri)
lite-server.py:130:    (options, args) = 
api.bootstrap_with_global_options(parser, context='lite')
```
"""

See the full comment at 
https://github.com/freeipa/freeipa/pull/280#issuecomment-263513330
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