URL: https://github.com/freeipa/freeipa/pull/280
Title: #280: Set explicit confdir option for global contexts

tiran commented:
"""
- [X] 
```daemons/dnssec/ipa-dnskeysync-replica:124:ipalib.api.bootstrap(in_server=True,
 log=None)  # no logging to file```
- [X] ```daemons/dnssec/ipa-dnskeysyncd:23:api.bootstrap(in_server=True, 
log=None)  # no logging to file```
- [X] 
```daemons/dnssec/ipa-ods-exporter:618:ipalib.api.bootstrap(in_server=True, 
log=None)  # no logging to file```
- [ ] ```doc/guide/wsgi.py.txt:9:env._bootstrap(context='server', log=None)```
- [ ] ```doc/guide/wsgi.py.txt:13:api.bootstrap(context='server', 
debug=env.debug, log=None) (ref:wsgi-app-bootstrap)```
- [X] ```install/restart_scripts/renew_ra_cert:39:    
api.bootstrap(in_server=True, context='restart')```
- [X] ```install/tools/ipa-adtrust-install:269:    api.bootstrap(**cfg)```
- [X] ```install/tools/ipa-ca-install:262:    api.bootstrap(in_server=True, 
ra_plugin='dogtag')```
- [ ] ```install/tools/ipa-compat-manage:105:    api.bootstrap(context='cli', 
in_server=True, debug=options.debug)```
- [ ] ```install/tools/ipa-csreplica-manage:418:    api.bootstrap(**api_env)```
- [X] ```install/tools/ipa-dns-install:139:    api.bootstrap(**cfg)```
- [ ] ```install/tools/ipa-managed-entries:75:    api.bootstrap(context='cli', 
debug=options.debug)```
- [X] ```install/tools/ipa-nis-manage:118:    api.bootstrap(context='cli', 
debug=options.debug, in_server=True)```
- [X] ```install/tools/ipa-replica-manage:1512:    api.bootstrap(**api_env)```
- [ ] ```ipaserver/dnssec/ldapkeydb.py:417:    
ipalib.api.bootstrap(in_server=True, log=None)  # no logging to file```
- [ ] ```ipaserver/advise/base.py:238:        api.bootstrap(in_server=False, 
context='cli')```
- [ ] ```ipaserver/advise/base.py:240:        
advise_api.bootstrap(in_server=False, context='cli')```
- [ ] ```ipaserver/install/ipa_cacert_manage.py:99:        
api.bootstrap(in_server=True)```
- [ ] ```ipaserver/install/ipa_kra_install.py:80:        
api.bootstrap(in_server=True)```
- [ ] ```ipaserver/install/ipa_otptoken_import.py:512:        
api.bootstrap(in_server=True)```
- [ ] ```ipaserver/install/ipa_replica_prepare.py:183:        
api.bootstrap(in_server=True)```
- [ ] ```ipaserver/install/ipa_server_certinstall.py:102:        
api.bootstrap(in_server=True)```
- [ ] ```ipatests/test_ipaserver/test_ldap.py:114:        
myapi.bootstrap(context='cli', in_server=True)```
- [ ] ```ipatests/test_ipaserver/test_serverroles.py:472:    
test_api.bootstrap(in_server=True, ldap_uri=api.env.ldap_uri)```
- [ ] ```lite-server.py:130:    (options, args) = 
api.bootstrap_with_global_options(parser, context='lite')```

"""

See the full comment at 
https://github.com/freeipa/freeipa/pull/280#issuecomment-263861585
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