I had this working, I don't know why but for some reason it doesn't anymore. 
Any user in LDAP receives an Access-Accept. Here's my entire radiusd.conf and 
the output of a user that is not in the "VPN" group receiving an Access-Accept 
using radtest. Is there something wrong with my configuration? 

Thanks

---radiusd.conf---
prefix = /usr
exec_prefix = ${prefix}
sysconfdir = /etc
localstatedir = /var
sbindir = ${exec_prefix}/sbin
logdir = ${localstatedir}/log/radius
raddbdir = ${sysconfdir}/raddb
radacctdir = ${logdir}/radacct
confdir = ${raddbdir}
run_dir = ${localstatedir}/run/radiusd
log_file = ${logdir}/radius.log
libdir = ${exec_prefix}/lib
pidfile = ${run_dir}/radiusd.pid
user = radiusd
group = radiusd
max_request_time = 30
delete_blocked_requests = no
cleanup_delay = 5
max_requests = 1024
bind_address = *
port = 0
hostname_lookups = no
allow_core_dumps = no
regular_expressions     = yes
extended_expressions    = yes
log_stripped_names = no
log_auth = no
log_auth_badpass = no
log_auth_goodpass = no
usercollide = no
lower_user = no
lower_pass = no
nospace_user = no
nospace_pass = no
checkrad = ${sbindir}/checkrad
security {
        max_attributes = 200
        reject_delay = 1
        status_server = no
}

$INCLUDE  ${confdir}/clients.conf
thread pool {
        start_servers = 5
        max_servers = 32
        min_spare_servers = 3
        max_spare_servers = 10
        max_requests_per_server = 0
}

# MODULE CONFIGURATION
#
modules {
        pap {
                encryption_scheme = crypt
        }
        chap {
                authtype = CHAP
        }
        pam {
                pam_auth = radiusd
        }
        unix {
        }
$INCLUDE ${confdir}/eap.conf
        mschap {
                authtype = MS-CHAP
                #use_mppe = no
                #require_encryption = yes
                #require_strong = yes
                #with_ntdomain_hack = no
                #ntlm_auth = "/path/to/ntlm_auth --request-nt-key 
--username=%{Stripped-User-Name:-%{User-Name:-None}} 
--challenge=%{mschap:Challenge:-00} --nt-response=%{mschap:NT-Response:-00}"
        }
        ldap {
                server = "ldaps://127.0.0.1"
                identity = "uid=readonly,ou=Users,dc=testdomain,dc=com"
                password = "password"
                basedn = "dc=testdomain,dc=com"
                filter = "(uid=%{Stripped-User-Name:-%{User-Name}})"
                dictionary_mapping = ${raddbdir}/ldap.attrmap
                ldap_connections_number = 5
                #password_header = "{SMD5}"
                #password_attribute = userPassword
                #access_attr = "uid"
                groupname_attribute = cn
                groupmembership_filter = 
"(|(&(objectClass=GroupOfNames)(member=%{Ldap-UserDn}))(&(objectClass=GroupOfUniqueNames)(uniquemember=%{Ldap-UserDn})))"
                groupmembership_attribute = VPN
                timeout = 4
                timelimit = 3
                net_timeout = 1
        }
        realm suffix {
                format = suffix
                delimiter = "@"
                ignore_default = no
                ignore_null = no
        }
        checkval {
                item-name = Calling-Station-Id
                check-name = Calling-Station-Id
                data-type = string
        }
        preprocess {
                huntgroups = ${confdir}/huntgroups
                hints = ${confdir}/hints
                with_ascend_hack = no
                ascend_channels_per_line = 23
                with_ntdomain_hack = no
                with_specialix_jetstream_hack = no
                with_cisco_vsa_hack = no
        }
        files {
                usersfile = ${confdir}/users
                acctusersfile = ${confdir}/acct_users
                compat = no
        }
        detail {
                detailfile = ${radacctdir}/%{Client-IP-Address}/detail-%Y%m%d
                detailperm = 0600
        }
        acct_unique {
                key = "User-Name, Acct-Session-Id, NAS-IP-Address, 
Client-IP-Address, NAS-Port"
        }
        $INCLUDE  ${confdir}/sql.conf
        radutmp {
                filename = ${logdir}/radutmp
                username = %{User-Name}
                case_sensitive = yes
                check_with_nas = yes
                perm = 0600
                callerid = "yes"
        }
        radutmp sradutmp {
                filename = ${logdir}/sradutmp
                perm = 0644
                callerid = "no"
        }
        attr_filter {
                attrsfile = ${confdir}/attrs
        }
        counter daily {
                filename = ${raddbdir}/db.daily
                key = User-Name
                count-attribute = Acct-Session-Time
                reset = daily
                counter-name = Daily-Session-Time
                check-name = Max-Daily-Session
                allowed-servicetype = Framed-User
                cache-size = 5000
        }
        always fail {
                rcode = fail
        }
        always reject {
                rcode = reject
        }
        always ok {
                rcode = ok
                simulcount = 0
                mpp = no
        }
        expr {
        }
        digest {
        }
        exec {
                wait = yes
                input_pairs = request
        }
        exec echo {
                wait = yes
                program = "/bin/echo %{User-Name}"
                input_pairs = request
                output_pairs = reply
        }
        ippool main_pool {
                range-start = 192.168.1.1
                range-stop = 192.168.3.254
                netmask = 255.255.255.0
                cache-size = 800
                session-db = ${raddbdir}/db.ippool
                ip-index = ${raddbdir}/db.ipindex
                override = no
                maximum-timeout = 0
        }

        # $INCLUDE  ${confdir}/x99.conf

}

instantiate {
        exec
        expr
}
authorize {
        preprocess
        chap
        mschap
        suffix
        eap
        ldap
}
authenticate {
        Auth-Type PAP {
                pap
        }
        Auth-Type CHAP {
                chap
        }
        Auth-Type MS-CHAP {
                mschap
        }
        Auth-Type LDAP {
                ldap
        }
        eap
}
preacct {
        preprocess
        acct_unique
        suffix
        files
}
accounting {
        detail
        unix
        radutmp
}
session {
        radutmp
}
post-auth {
}
pre-proxy {
}
post-proxy {
        eap
}


----debug output----
read_config_files:  reading clients
read_config_files:  reading realms
radiusd:  entering modules setup
Module: Library search path is /usr/lib
Module: Loaded exec
 exec: wait = yes
 exec: program = "(null)"
 exec: input_pairs = "request"
 exec: output_pairs = "(null)"
 exec: packet_type = "(null)"
rlm_exec: Wait=yes but no output defined. Did you mean output=none?
Module: Instantiated exec (exec)
Module: Loaded expr
Module: Instantiated expr (expr)
Module: Loaded PAP
 pap: encryption_scheme = "crypt"
Module: Instantiated pap (pap)
Module: Loaded CHAP
Module: Instantiated chap (chap)
Module: Loaded MS-CHAP
 mschap: use_mppe = yes
 mschap: require_encryption = no
 mschap: require_strong = no
 mschap: with_ntdomain_hack = no
 mschap: passwd = "(null)"
 mschap: authtype = "MS-CHAP"
 mschap: ntlm_auth = "(null)"
Module: Instantiated mschap (mschap)
Module: Loaded LDAP
 ldap: server = "ldaps://127.0.0.1"
 ldap: port = 389
 ldap: net_timeout = 1
 ldap: timeout = 4
 ldap: timelimit = 3
 ldap: identity = "uid=readonly,ou=Users,dc=testdomain,dc=com"
 ldap: tls_mode = no
 ldap: start_tls = no
 ldap: tls_cacertfile = "(null)"
 ldap: tls_cacertdir = "(null)"
 ldap: tls_certfile = "(null)"
 ldap: tls_keyfile = "(null)"
 ldap: tls_randfile = "(null)"
 ldap: tls_require_cert = "allow"
 ldap: password = "password"
 ldap: basedn = "dc=testdomain,dc=com"
 ldap: filter = "(uid=%{Stripped-User-Name:-%{User-Name}})"
 ldap: base_filter = "(objectclass=radiusprofile)"
 ldap: default_profile = "(null)"
 ldap: profile_attribute = "(null)"
 ldap: password_header = "(null)"
 ldap: password_attribute = "(null)"
 ldap: access_attr = "(null)"
 ldap: groupname_attribute = "cn"
 ldap: groupmembership_filter = 
"(|(&(objectClass=GroupOfNames)(member=%{Ldap-UserDn}))(&(objectClass=GroupOfUniqueNames)(uniquemember=%{Ldap-UserDn})))"
 ldap: groupmembership_attribute = "VPN"
 ldap: dictionary_mapping = "/etc/raddb/ldap.attrmap"
 ldap: ldap_debug = 0
 ldap: ldap_connections_number = 5
 ldap: compare_check_items = no
 ldap: access_attr_used_for_allow = yes
 ldap: do_xlat = yes
rlm_ldap: Registering ldap_groupcmp for Ldap-Group
rlm_ldap: Registering ldap_xlat with xlat_name ldap
rlm_ldap: reading ldap<->radius mappings from file /etc/raddb/ldap.attrmap
rlm_ldap: LDAP radiusCheckItem mapped to RADIUS $GENERIC$
rlm_ldap: LDAP radiusReplyItem mapped to RADIUS $GENERIC$
rlm_ldap: LDAP radiusAuthType mapped to RADIUS Auth-Type
rlm_ldap: LDAP radiusSimultaneousUse mapped to RADIUS Simultaneous-Use
rlm_ldap: LDAP radiusCalledStationId mapped to RADIUS Called-Station-Id
rlm_ldap: LDAP radiusCallingStationId mapped to RADIUS Calling-Station-Id
rlm_ldap: LDAP sambaLMPassword mapped to RADIUS LM-Password
rlm_ldap: LDAP sambaNTPassword mapped to RADIUS NT-Password
rlm_ldap: LDAP acctFlags mapped to RADIUS SMB-Account-CTRL-TEXT
rlm_ldap: LDAP radiusExpiration mapped to RADIUS Expiration
rlm_ldap: LDAP radiusServiceType mapped to RADIUS Service-Type
rlm_ldap: LDAP radiusFramedProtocol mapped to RADIUS Framed-Protocol
rlm_ldap: LDAP radiusFramedIPAddress mapped to RADIUS Framed-IP-Address
rlm_ldap: LDAP radiusFramedIPNetmask mapped to RADIUS Framed-IP-Netmask
rlm_ldap: LDAP radiusFramedRoute mapped to RADIUS Framed-Route
rlm_ldap: LDAP radiusFramedRouting mapped to RADIUS Framed-Routing
rlm_ldap: LDAP radiusFilterId mapped to RADIUS Filter-Id
rlm_ldap: LDAP radiusFramedMTU mapped to RADIUS Framed-MTU
rlm_ldap: LDAP radiusFramedCompression mapped to RADIUS Framed-Compression
rlm_ldap: LDAP radiusLoginIPHost mapped to RADIUS Login-IP-Host
rlm_ldap: LDAP radiusLoginService mapped to RADIUS Login-Service
rlm_ldap: LDAP radiusLoginTCPPort mapped to RADIUS Login-TCP-Port
rlm_ldap: LDAP radiusCallbackNumber mapped to RADIUS Callback-Number
rlm_ldap: LDAP radiusCallbackId mapped to RADIUS Callback-Id
rlm_ldap: LDAP radiusFramedIPXNetwork mapped to RADIUS Framed-IPX-Network
rlm_ldap: LDAP radiusClass mapped to RADIUS Class
rlm_ldap: LDAP radiusSessionTimeout mapped to RADIUS Session-Timeout
rlm_ldap: LDAP radiusIdleTimeout mapped to RADIUS Idle-Timeout
rlm_ldap: LDAP radiusTerminationAction mapped to RADIUS Termination-Action
rlm_ldap: LDAP radiusLoginLATService mapped to RADIUS Login-LAT-Service
rlm_ldap: LDAP radiusLoginLATNode mapped to RADIUS Login-LAT-Node
rlm_ldap: LDAP radiusLoginLATGroup mapped to RADIUS Login-LAT-Group
rlm_ldap: LDAP radiusFramedAppleTalkLink mapped to RADIUS Framed-AppleTalk-Link
rlm_ldap: LDAP radiusFramedAppleTalkNetwork mapped to RADIUS 
Framed-AppleTalk-Network
rlm_ldap: LDAP radiusFramedAppleTalkZone mapped to RADIUS Framed-AppleTalk-Zone
rlm_ldap: LDAP radiusPortLimit mapped to RADIUS Port-Limit
rlm_ldap: LDAP radiusLoginLATPort mapped to RADIUS Login-LAT-Port
conns: 0x815dd68
Module: Instantiated ldap (ldap)
Module: Loaded eap
 eap: default_eap_type = "peap"
 eap: timer_expire = 60
 eap: ignore_unknown_eap_types = no
 eap: cisco_accounting_username_bug = no
rlm_eap: Loaded and initialized type md5
rlm_eap: Loaded and initialized type leap
 gtc: challenge = "Password: "
 gtc: auth_type = "PAP"
rlm_eap: Loaded and initialized type gtc
 tls: rsa_key_exchange = no
 tls: dh_key_exchange = yes
 tls: rsa_key_length = 512
 tls: dh_key_length = 512
 tls: verify_depth = 0
 tls: CA_path = "(null)"
 tls: pem_file_type = yes
 tls: private_key_file = "/etc/raddb/certs/cert-srv.pem"
 tls: certificate_file = "/etc/raddb/certs/cert-srv.pem"
 tls: CA_file = "/etc/raddb/certs/demoCA/cacert.pem"
 tls: private_key_password = "whatever"
 tls: dh_file = "/etc/raddb/certs/dh"
 tls: random_file = "/etc/raddb/certs/random"
 tls: fragment_size = 1024
 tls: include_length = yes
 tls: check_crl = yes
 tls: check_cert_cn = "%{User-Name}"
rlm_eap: Loaded and initialized type tls
 peap: default_eap_type = "mschapv2"
 peap: copy_request_to_tunnel = no
 peap: use_tunneled_reply = no
 peap: proxy_tunneled_request_as_eap = yes
rlm_eap: Loaded and initialized type peap
 mschapv2: with_ntdomain_hack = no
rlm_eap: Loaded and initialized type mschapv2
Module: Instantiated eap (eap)
Module: Loaded preprocess
 preprocess: huntgroups = "/etc/raddb/huntgroups"
 preprocess: hints = "/etc/raddb/hints"
 preprocess: with_ascend_hack = no
 preprocess: ascend_channels_per_line = 23
 preprocess: with_ntdomain_hack = no
 preprocess: with_specialix_jetstream_hack = no
 preprocess: with_cisco_vsa_hack = no
Module: Instantiated preprocess (preprocess)
Module: Loaded realm
 realm: format = "suffix"
 realm: delimiter = "@"
 realm: ignore_default = no
 realm: ignore_null = no
Module: Instantiated realm (suffix)
Module: Loaded Acct-Unique-Session-Id
 acct_unique: key = "User-Name, Acct-Session-Id, NAS-IP-Address, 
Client-IP-Address, NAS-Port"
Module: Instantiated acct_unique (acct_unique)
Module: Loaded files
 files: usersfile = "/etc/raddb/users"
 files: acctusersfile = "/etc/raddb/acct_users"
 files: preproxy_usersfile = "/etc/raddb/preproxy_users"
 files: compat = "no"
Module: Instantiated files (files)
Module: Loaded detail
 detail: detailfile = 
"/var/log/radius/radacct/%{Client-IP-Address}/detail-%Y%m%d"
 detail: detailperm = 384
 detail: dirperm = 493
 detail: locking = no
Module: Instantiated detail (detail)
Module: Loaded System
 unix: cache = no
 unix: passwd = "(null)"
 unix: shadow = "(null)"
 unix: group = "(null)"
 unix: radwtmp = "NULL"
 unix: usegroup = no
 unix: cache_reload = 600
Module: Instantiated unix (unix)
Module: Loaded radutmp
 radutmp: filename = "/var/log/radius/radutmp"
 radutmp: username = "%{User-Name}"
 radutmp: case_sensitive = yes
 radutmp: check_with_nas = yes
 radutmp: perm = 384
 radutmp: callerid = yes
Module: Instantiated radutmp (radutmp)
Listening on authentication *:1812
Listening on accounting *:1813
Listening on proxy *:1814
Ready to process requests.
rad_recv: Access-Request packet from host 127.0.0.1:33039, id=148, length=60
        User-Name = "testuser"
        User-Password = "1234passssap"
        NAS-IP-Address = 255.255.255.255
        NAS-Port = 1
  Processing the authorize section of radiusd.conf
modcall: entering group authorize for request 0
  modcall[authorize]: module "preprocess" returns ok for request 0
  modcall[authorize]: module "chap" returns noop for request 0
  modcall[authorize]: module "mschap" returns noop for request 0
    rlm_realm: No '@' in User-Name = "testuser", looking up realm NULL
    rlm_realm: No such realm "NULL"
  modcall[authorize]: module "suffix" returns noop for request 0
  rlm_eap: No EAP-Message, not doing EAP
  modcall[authorize]: module "eap" returns noop for request 0
rlm_ldap: - authorize
rlm_ldap: performing user authorization for testuser
radius_xlat:  '(uid=testuser)'
radius_xlat:  'dc=testdomain,dc=com'
rlm_ldap: ldap_get_conn: Checking Id: 0
rlm_ldap: ldap_get_conn: Got Id: 0
rlm_ldap: attempting LDAP reconnection
rlm_ldap: (re)connect to ldaps://127.0.0.1, authentication 0
rlm_ldap: bind as uid=readonly,ou=Users,dc=testdomain,dc=com/password to 
ldaps://127.0.0.1
rlm_ldap: waiting for bind result ...
rlm_ldap: Bind was successful
rlm_ldap: performing search in dc=testdomain,dc=com, with filter (uid=testuser)
rlm_ldap: looking for check items in directory...
rlm_ldap: Adding sambaNTPassword as NT-Password, value 
D46152C559EAF8555FC1A92B74FB1B21 & op=21
rlm_ldap: Adding sambaLMPassword as LM-Password, value 
57CA90155953FF855F2F04AD3AAD7244 & op=21
rlm_ldap: looking for reply items in directory...
rlm_ldap: user testuser authorized to use remote access
rlm_ldap: ldap_release_conn: Release Id: 0
  modcall[authorize]: module "ldap" returns ok for request 0
modcall: group authorize returns ok for request 0
  rad_check_password:  Found Auth-Type LDAP
auth: type "LDAP"
  Processing the authenticate section of radiusd.conf
modcall: entering group Auth-Type for request 0
rlm_ldap: - authenticate
rlm_ldap: login attempt by "testuser" with password "1234passssap"
rlm_ldap: user DN: uid=testuser,ou=Users,dc=testdomain,dc=com
rlm_ldap: (re)connect to ldaps://127.0.0.1, authentication 1
rlm_ldap: bind as uid=testuser,ou=Users,dc=testdomain,dc=com/1234passssap to 
ldaps://127.0.0.1
rlm_ldap: waiting for bind result ...
rlm_ldap: Bind was successful
rlm_ldap: user testuser authenticated succesfully
  modcall[authenticate]: module "ldap" returns ok for request 0
modcall: group Auth-Type returns ok for request 0
Sending Access-Accept of id 148 to 127.0.0.1:33039
Finished request 0
Going to the next request



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