I tried running mri_watershed on Anthony's computer today and got a different error from last time. I got the following error:
% freesurfer/bin/mri_watershed
dyld: freesurfer/bin/mri_watershed can't open library: /usr/pubsw/packages/gsl/current/lib/libgsl.0.dylib (No such file or directory, errno = 2)
Trace/BPT trap
So I installed gsl and gsl-shlibs, and I've gotten mri_watershed to work for me. I will have Anthony and then another user try it out to see if installing gsl fixed the issue and let you know. Thank you.
>Xander
On Apr 4, 2006, at 4:05 PM, Nick Schmansky wrote:
Anthony,
I don't know what to recommend. I cannot seem to find this symbol
defined anywhere (even Googling it). The panther distribution has worked
for two other people (that i know of) outside of MGH, so I'm not sure
what I can suggest. The 'otool' output looks correct.
If I can think of any other debugging techniques to try, I will send
them along.
Nick
On Mon, 2006-04-03 at 14:06 -0500, Anthony Steven Dick wrote:
Hi Nick--
I'm responding on behalf of Xander (our computer tech):
[serge:NL-GCS/subjects/freesurfer_3.0.1] adick% otool -L `which
mri_watershed`
/Applications/freesurfer/bin//mri_watershed:
/usr/pubsw/packages/gsl/current/lib/libgsl.0.dylib (compatibility
version 8.0.0, current version 8.0.0)
/usr/pubsw/packages/gsl/current/lib/libgslcblas.0.dylib (compatibility
version 1.0.0, current version 1.0.0)
/usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.3)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version
88.1.5)
/usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version
7.3.0)
/usr/lib/libgcc_s.1.dylib (compatibility version 1.0.0, current version
1.0.0)
/usr/lib/libmx.A.dylib (compatibility version 1.0.0, current version 92.0.0)
Anthony
Nick Schmansky wrote:
Can you send me the output of:
otool -L `which mri_watershed`
On Mon, 2006-04-03 at 13:34 -0500, [EMAIL PROTECTED] wrote:
Hi,
I just downloaded and installed from:
http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer-Darwin-panther-
stable-pub-v3.0.1-full.dmg
And installed Freesurfer. Most of the apps have worked without a problem,
however mri_watershed yields the following error:
dyld: mri_watershed Undefined symbols:
_acns
Trace/BPT trap
I have redowndloaded the above package and tried to extract mri_watershed, in
case I just got a corrupted binary, but each time I do so I get the same errors.
My machine is running MAC OS X 10.3.9. Please let me know if there is any fix I
can do for this error? Thank you very much.
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