When you look in je001_018_4_1-001/mri/orig is there a file called
001.mgz? It can't be an analyze file
Andrew Ellison wrote:
Hi all,
Library issues are all set, I now am having a problem getting
freesurfer to recognize .img and .hdr files,
[EMAIL PROTECTED] freesurfer]#
/usr/local/freesurfer/bin/recon-all -autorecon1 -subjid je001_018_4_1-001
INFO: SUBJECTS_DIR is
/usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer
Actual FREESURFER_HOME /usr/local/freesurfer
-rw-rw-r-- 1 root root 16873 Jul 27 10:16
/usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer/je001_018_4_1-001/scripts/recon-
all.log
Linux ebrcb-dhcp-240-47.bumc.bu.edu
<http://ebrcb-dhcp-240-47.bumc.bu.edu> 2.6.18-8.1.8.el5 #1 SMP Tue Jul
10 06:50:22 EDT 2007 i686 i686 i386 GNU/Linux
#--------------------------------------------
[EMAIL PROTECTED] MotionCor Fri Jul 27 10:17:12 EDT 2007
ERROR: no run data found in
/usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer/je001_018_4_1-001/mri.
Make sure to
have a volume called 001.mgz in
/usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer/je001_018_4_1-001/mri/orig.
If you have a second run of data call it 002.mgz, etc.
See also: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion
Linux ebrcb-dhcp-240-47.bumc.bu.edu
<http://ebrcb-dhcp-240-47.bumc.bu.edu> 2.6.18-8.1.8.el5 #1 SMP Tue Jul
10 06:50:22 EDT 2007 i686 i686 i386 GNU/Linux
recon-all exited with ERRORS at Fri Jul 27 10:17:12 EDT 2007
files are located where freesurfer is looking but isnt finding them,
any help would be great, thanks!
Andy
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Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
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In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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