Hi,
I am having troubles getting the right options with mri_convert.
I ran:
recon-all -autorecon1 -i original.mnc -s subj1
recon-all -subcortseg -s subj1
I now want to convert aseg.mgz into aseg.mnc but in the same space and
with the same orientation as my original.mnc file.
My original.mnc file has the following attributes:
double zspace ;
zspace:comments = "Z increases from patient inferior to superior" ;
zspace:step = -0.9765625 ;
zspace:start = 127.418768256005 ;
zspace:direction_cosines = -0.0275245718714001,
-0.000514697647100001, 0.999620994692302 ;
double yspace ;
yspace:comments = "Y increases from patient posterior to anterior" ;
yspace:step = -0.9765625 ;
yspace:start = 146.850463958339 ;
yspace:direction_cosines = -0.0186971433325, 0.999825193136882,
-2.319984599e-08 ;
double xspace ;
xspace:comments = "X increases from patient left to right" ;
xspace:step = 1.49999999999996 ;
xspace:start = -95.4780255890689 ;
xspace:direction_cosines = 0.999446254069973, 0.0186900576545041,
0.0275293837630133 ;
short image(zspace, yspace, xspace) ;
Any help would be much appreciated.
thanks,
mishkin
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
