Messages by Date
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2024/06/07
Re: [Freesurfer] Incoporating synthstrip and synthseg into recon-all
Hoffmann, Malte,PhD
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2024/06/07
Re: [Freesurfer] Incoporating synthstrip and synthseg into recon-all
Dan Levitas
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2024/06/07
Re: [Freesurfer] Incoporating synthstrip and synthseg into recon-all
Dan Levitas
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2024/06/07
Re: [Freesurfer] Incoporating synthstrip and synthseg into recon-all
Hoffmann, Malte,PhD
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2024/06/07
[Freesurfer] Transformed geometry does not match
Yasmine Salman
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2024/06/06
[Freesurfer] Issue with cortical data extraction for mkanalysis-sess
O'Dor, Sarah
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2024/06/06
Re: [Freesurfer] Bug in mri_convert reslice-like with 4D images
fsbuild
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2024/06/06
[Freesurfer] negative values converting mgz files to nifty
Nina Rouhani
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2024/06/06
[Freesurfer] Bug in mri_convert reslice-like with 4D images
Iglesias Gonzalez, Juan E.
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2024/06/06
[Freesurfer] Incoporating synthstrip and synthseg into recon-all
Dan Levitas
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2024/06/06
Re: [Freesurfer] fs_temp_file: Command not found
Huang, Yujing
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2024/06/06
[Freesurfer] fs_temp_file: Command not found
Cameron, Jack
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2024/06/04
Re: [Freesurfer] Freesurfer license
Wighton, Paul
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2024/06/04
Re: [Freesurfer] mri_fuse_segmentation error: could not open file
Tommaso Cusolito S319624
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2024/06/03
Re: [Freesurfer] Freesurfer license
Ayoub, Lizbeth
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2024/06/03
[Freesurfer] fmriprep and freesurfer license
Patterson, Dianne K - (dkp)
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2024/06/03
Re: [Freesurfer] Contrast files - 2 groups, 4 covariates
Douglas N. Greve
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2024/06/03
Re: [Freesurfer] Recon-all for a common template
Douglas N. Greve
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2024/06/03
Re: [Freesurfer] How to get the parcellations to the initial space as before running recon all
Douglas N. Greve
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2024/06/03
Re: [Freesurfer] Freesurfer license
Wighton, Paul
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2024/06/03
[Freesurfer] Freesurfer license
Ayoub, Lizbeth
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2024/06/03
[Freesurfer] How to get the parcellations to the initial space as before running recon all
Reji, A. (Amal, Student M-EE)
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2024/05/31
[Freesurfer] Call for applications: LINC fellows program 2024-25
Yendiki, Anastasia
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2024/05/30
Re: [Freesurfer] License for FreeSurfer 5.x
fsbuild
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2024/05/30
[Freesurfer] License for FreeSurfer 5.x
Rafael Navarro
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2024/05/29
Re: [Freesurfer] Recon-all for a common template
Douglas N. Greve
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2024/05/28
Re: [Freesurfer] SynthSR problem
fsbuild
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2024/05/28
[Freesurfer] SynthSR problem
Tabasi, Farhad
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2024/05/28
Re: [Freesurfer] Recon-all for a common template
Chen Yang
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2024/05/27
Re: [Freesurfer] Group Stats for hipposubfields, brainstem and amygdalar
fsbuild
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2024/05/27
Re: [Freesurfer] Group Stats for hipposubfields, brainstem and amygdalar
Carina Obermüller
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2024/05/27
[Freesurfer] freesurfer coordinate systems error: mismatch region hippocampal atlas in matlab and freeview for high resolution
Le, Jarod
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2024/05/25
Re: [Freesurfer] MAC compatibilty
fsbuild
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2024/05/25
[Freesurfer] MAC compatibilty
Silvia Montanari
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2024/05/24
[Freesurfer] Research Technician positions in the FreeSurfer lab
Player, Allison A. Stevens
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2024/05/24
[Freesurfer] squirrel data sharing format available in beta
Gregory Book
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2024/05/23
[Freesurfer] run_samseg: Optimizer: maximalDeformation is too small; stopping; killed
Stefano Cerri
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2024/05/22
[Freesurfer] run_samseg: Optimizer: maximalDeformation is too small; stopping; killed
Ringki Marie Siewert
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2024/05/22
[Freesurfer] Fwd: Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus
Ahsan Ali
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2024/05/22
[Freesurfer] Intensity affected after using -c flag in mri_convert
ERNEST KISSI
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2024/05/22
Re: [Freesurfer] Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus
Fischl, Bruce R.,PHD
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2024/05/22
Re: [Freesurfer] fspalm error
Stefano Delli Pizzi
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2024/05/22
[Freesurfer] Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus
Ahsan Ali
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2024/05/21
[Freesurfer] PhD candidate position - high-resolution imaging of the human claustrum
Zaretskaya, Natalia (natalia.zaretsk...@uni-graz.at)
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2024/05/21
[Freesurfer] Probability density function
Jingjing Liu
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2024/05/21
[Freesurfer] Group Stats for hipposubfields, brainstem and amygdalar
Carina Obermüller
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2024/05/20
[Freesurfer] how to resolve recon-all stopping at fill step
Dong, Yilei
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2024/05/19
[Freesurfer] Request to Edit Page (if possible)
Emily Popa
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2024/05/18
[Freesurfer] Freesurfer on a high-performance cluster (HPC) - MATLAB runtime
Camilo Castelblanco Riveros
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2024/05/18
[Freesurfer] Unequal size groups
stdp82
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2024/05/16
[Freesurfer] mri_watershed Error: read failed
Schroder, Kirsten
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2024/05/16
[Freesurfer] Valid options.txt file for mris_pmake (and maybe .dsh.yml too)
Garikoitz Lerma-Usabiaga
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2024/05/15
Re: [Freesurfer] Issue related to converting .nii.gz file to .mgz using FreeSurfer's mri_convert
Huang, Yujing
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2024/05/15
Re: [Freesurfer] error using mri_em_register
Huang, Yujing
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2024/05/15
[Freesurfer] error using mri_em_register
Michal Zamberg-Elad
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2024/05/15
[Freesurfer] Issue related to converting .nii.gz file to .mgz using FreeSurfer's mri_convert
Tsigaras, Thanos
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2024/05/14
Re: [Freesurfer] Hippocampus subfield LUT
Douglas N. Greve
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2024/05/14
[Freesurfer] Hippocampus subfield LUT
karl landheer
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2024/05/14
Re: [Freesurfer] Retinotopy error computing contrast matrices
Mesquita, Tiago
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2024/05/13
[Freesurfer] Harmonization (Site/Scanner) for FreeSurfer Area Data
Tejaswi D. Sudhakar
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2024/05/10
[Freesurfer] Subcortical surfaces from volume features.
Sam Maddox (CMP - Postgraduate Researcher)
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2024/05/10
Re: [Freesurfer] Contrast files - 2 groups, 4 covariates
Liliana Wu
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2024/05/10
Re: [Freesurfer] Contrast files - 2 groups, 4 covariates
Douglas N. Greve
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2024/05/10
[Freesurfer] mri_segment_hypothalamic_subunits 7.4.1 issue
Antonio Di Renzo
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2024/05/09
[Freesurfer] Contrast files - 2 groups, 4 covariates
Liliana Wu
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2024/05/09
Re: [Freesurfer] MCR install for parcellation
fsbuild
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2024/05/09
[Freesurfer] MCR install for parcellation
Antonio Di Renzo
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2024/05/09
[Freesurfer] Postdoc Positions in Cognitive Neuroscience/ Neuroimaging Genomics
X K
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2024/05/08
[Freesurfer] Incorporating hi-res T2w image in longitudinal pipeline
Raikes, Adam C - (adamraikes)
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2024/05/08
Re: [Freesurfer] outcome directions of longitudinal two stage model
L
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2024/05/08
Re: [Freesurfer] surface and cortical thickness normalization
Douglas N. Greve
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2024/05/08
Re: [Freesurfer] Difference between 2 ways to set up fsgd file and contrasts
Douglas N. Greve
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2024/05/08
Re: [Freesurfer] outcome directions of longitudinal two stage model
Douglas N. Greve
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2024/05/08
Re: [Freesurfer] recon-all process still not finishing properly
Douglas N. Greve
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2024/05/08
Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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2024/05/07
[Freesurfer] outcome directions of longitudinal two stage model
L
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2024/05/07
Re: [Freesurfer] ERROR: cannot find AntsN4BiasFieldCorrectionFs in path
Huang, Yujing
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2024/05/07
Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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2024/05/07
[Freesurfer] ERROR: cannot find AntsN4BiasFieldCorrectionFs in path
Christine Farrugia
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2024/05/07
Re: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt
LYU, TIANXIANG
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2024/05/07
Re: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt
Huang, Yujing
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2024/05/07
Re: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt
LYU, TIANXIANG
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2024/05/07
Re: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt
Huang, Yujing
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2024/05/07
[Freesurfer] INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE IN HEALTHCARE (AIiH)
Jiaxiang ZHANG
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2024/05/07
[Freesurfer] SynthSR Changes Dimension
AmirHussein Abdolalizadeh
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2024/05/05
Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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2024/05/05
Re: [Freesurfer] Understanding registration with mri_synthmorph
Antoine Royer
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2024/05/04
Re: [Freesurfer] Understanding registration with mri_synthmorph
r04458005
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2024/05/04
Re: [Freesurfer] Understanding registration with mri_synthmorph
Hoffmann, Malte,PhD
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2024/05/04
Re: [Freesurfer] Understanding registration with mri_synthmorph
Antoine Royer
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2024/05/03
Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Diers, Kersten /DZNE
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2024/05/03
Re: [Freesurfer] recon-all process still not finishing properly
Dong, Yilei
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2024/05/03
Re: [Freesurfer] surface and cortical thickness normalization
Fischl, Bruce R.,PHD
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2024/05/03
[Freesurfer] surface and cortical thickness normalization
yunus soleymani
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2024/05/02
[Freesurfer] Difference between 2 ways to set up fsgd file and contrasts
Lydia Chung
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2024/05/02
Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Reuter, Martin,Ph.D.
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2024/05/02
Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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2024/05/02
[Freesurfer] brain volumes normalization
yunus soleymani
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2024/05/02
Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Reuter, Martin,Ph.D.
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2024/05/02
Re: [Freesurfer] Infant Freesufer auto-recon failure
Zollei, Lilla,Ph.D.
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2024/05/02
Re: [Freesurfer] question about infantfreesurfer
Zollei, Lilla,Ph.D.
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2024/05/02
Re: [Freesurfer] brain volumes normalization
Douglas N. Greve
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2024/05/02
Re: [Freesurfer] Figures for publication
Douglas N. Greve
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2024/05/02
[Freesurfer] brain volumes normalization
yunus soleymani
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2024/05/01
Re: [Freesurfer] [FreeSurfer] recon-all exited with error - watershed error
Krystal Xiwing Yau
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2024/05/01
[Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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2024/05/01
Re: [Freesurfer] Registration in PETSurfer
Douglas N. Greve
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2024/05/01
[Freesurfer] Registration in PETSurfer
Ruben Dörfel
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2024/04/25
Re: [Freesurfer] Error: Label FG1.mpm.vpnl does not exist in SUBJECTS_DIR fsaverage!
Huang, Yujing
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2024/04/24
[Freesurfer] Error: Label FG1.mpm.vpnl does not exist in SUBJECTS_DIR fsaverage!
Pamela González Méndez
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2024/04/24
[Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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2024/04/23
Re: [Freesurfer] recon-all process still not finishing properly
Dong, Yilei
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2024/04/23
Re: [Freesurfer] Problem running recon-all
fsbuild
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2024/04/23
Re: [Freesurfer] Problem running recon-all
Gregory Book
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2024/04/23
Re: [Freesurfer] Problem running recon-all
fsbuild
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2024/04/23
Re: [Freesurfer] Problem running recon-all
Gregory Book
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2024/04/23
Re: [Freesurfer] Problem running recon-all
Gregory Book
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2024/04/23
Re: [Freesurfer] Problem running recon-all
Huang, Yujing
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2024/04/23
[Freesurfer] Problem running recon-all
Gregory Book
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2024/04/23
Re: [Freesurfer] question about infantfreesurfer
Knut J Bjuland
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2024/04/22
[Freesurfer] recon-all error
Gregory Book
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2024/04/22
[Freesurfer] FW: Infant Freesufer auto-recon failure
Lemley, Rachel
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2024/04/22
[Freesurfer] FW: Infant Freesufer auto-recon failure
Lemley, Rachel
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2024/04/22
[Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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2024/04/22
[Freesurfer] Figures for publication
Asuka Toyofuku
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2024/04/20
Re: [Freesurfer] Understanding registration with mri_synthmorph
Antoine Royer
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2024/04/20
Re: [Freesurfer] Understanding registration with mri_synthmorph
Hoffmann, Malte,PhD
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2024/04/20
[Freesurfer] Retinotopy error computing contrast matrices
Mesquita, Tiago
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2024/04/19
[Freesurfer] Understanding registration with mri_synthmorph
Antoine Royer
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2024/04/19
Re: [Freesurfer] editing segmentations from recon-all-clinical
Gopinath, Karthik
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2024/04/19
[Freesurfer] Postdoc position: MRI of brain networks in developmental neuropsychiatry
kathrine
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2024/04/19
[Freesurfer] 250 Voxels Won't Stay Erased from wm.mgz Upon Relaunch
Smith, Thomas
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2024/04/18
Re: [Freesurfer] recon-all process still not finishing properly
Douglas N. Greve
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2024/04/18
Re: [Freesurfer] Enorm threshold for dynamic PET images
Douglas N. Greve
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2024/04/18
Re: [Freesurfer] GLM Using 2 Surfaces - Thickness and Area
Douglas N. Greve
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2024/04/18
Re: [Freesurfer] gunzip error in load_mgh.m when file path contains spaces
Douglas N. Greve
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2024/04/18
Re: [Freesurfer] Skin-Skull-Brain segmentation
Douglas N. Greve
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2024/04/18
Re: [Freesurfer] surface-based filtering
Douglas N. Greve
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2024/04/18
Re: [Freesurfer] BBRegistration with FSL topup
Douglas N. Greve
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2024/04/18
Re: [Freesurfer] question about infantfreesurfer
Zollei, Lilla,Ph.D.
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2024/04/18
Re: [Freesurfer] Default intensity values for gray and white matter
Fischl, Bruce R.,PHD
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2024/04/18
[Freesurfer] GLM Using 2 Surfaces - Thickness and Area
Tejaswi D. Sudhakar
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2024/04/18
[Freesurfer] Default intensity values for gray and white matter
Lokhandwala, Sanna
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2024/04/18
Re: [Freesurfer] vertices are -1 when using vol2label
Douglas N. Greve
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2024/04/17
[Freesurfer] gunzip error in load_mgh.m when file path contains spaces
Tyler Slouf
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2024/04/17
Re: [Freesurfer] MRInormFindControlPoints
Fischl, Bruce R.,PHD
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2024/04/17
Re: [Freesurfer] Freeview problems
fsbuild
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2024/04/17
Re: [Freesurfer] Freeview problems
Savoia, Alice (Stud. FPN)
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2024/04/16
Re: [Freesurfer] Error using mris_transform in Freesurfer 7.4.1
Huang, Yujing
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2024/04/16
[Freesurfer] Error using mris_transform in Freesurfer 7.4.1
Noemí Hostalet
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2024/04/15
Re: [Freesurfer] FreeSurfer Download and Install Error: Segmentation Fault
fsbuild
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2024/04/15
[Freesurfer] FreeSurfer Download and Install Error: Segmentation Fault
Angenelle Rosal
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2024/04/15
Re: [Freesurfer] Freeview problems
Huang, Yujing
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2024/04/15
Re: [Freesurfer] Freeview problems
Savoia, Alice (Stud. FPN)
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2024/04/15
Re: [Freesurfer] Freeview problems
Huang, Yujing
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2024/04/15
Re: [Freesurfer] Freeview problems
Savoia, Alice (Stud. FPN)
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2024/04/15
Re: [Freesurfer] Freeview problems
Huang, Yujing
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2024/04/15
Re: [Freesurfer] Freeview problems
Savoia, Alice (Stud. FPN)
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2024/04/15
Re: [Freesurfer] Freeview problems
Wang, Ruopeng
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2024/04/15
[Freesurfer] Freeview problems
Savoia, Alice (Stud. FPN)
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2024/04/15
[Freesurfer] Skin-Skull-Brain segmentation
XIE Jing
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2024/04/14
Re: [Freesurfer] I've tried what to do. But, still freeview doesn't work
Dicamillo, Robert
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2024/04/14
Re: [Freesurfer] freesurfer doesn't work
이준하
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2024/04/14
Re: [Freesurfer] freesurfer doesn't work
이준하
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2024/04/13
Re: [Freesurfer] freesurfer doesn't work
fsbuild
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2024/04/12
Re: [Freesurfer] surface-based filtering
Fischl, Bruce R.,PHD
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2024/04/12
Re: [Freesurfer] surface-based filtering
Jiaen Liu
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2024/04/12
Re: [Freesurfer] Question on using thalseg_1.1.h5
Georgios Argyropoulos
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2024/04/12
Re: [Freesurfer] Question on using thalseg_1.1.h5
Tregidgo, Henry
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2024/04/12
Re: [Freesurfer] Question on using thalseg_1.1.h5
Georgios Argyropoulos
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2024/04/12
Re: [Freesurfer] Question on using thalseg_1.1.h5
Tregidgo, Henry
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2024/04/11
Re: [Freesurfer] WMH-SynthSeg - Torch module not found
fsbuild
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2024/04/11
[Freesurfer] BBRegistration with FSL topup
Gianluca Guglietti
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2024/04/11
Re: [Freesurfer] mri_synthmorph
Hoffmann, Malte,PhD
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2024/04/11
Re: [Freesurfer] surface-based filtering
Jiaen Liu
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2024/04/11
Re: [Freesurfer] surface-based filtering
Fischl, Bruce R.,PHD
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2024/04/11
Re: [Freesurfer] surface-based filtering
Jiaen Liu
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2024/04/11
Re: [Freesurfer] surface-based filtering
Fischl, Bruce R.,PHD
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2024/04/11
[Freesurfer] surface-based filtering
Jiaen Liu
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2024/04/11
Re: [Freesurfer] Recon-all stuck at topology fix
Fischl, Bruce R.,PHD
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2024/04/11
Re: [Freesurfer] Surface vertex tkr-ras to native T1 RAS without volume files
Huang, Yujing
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2024/04/11
Re: [Freesurfer] Question on using thalseg_1.1.h5
Georgios Argyropoulos
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2024/04/11
[Freesurfer] Surface vertex tkr-ras to native T1 RAS without volume files
Dipterix Wang
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2024/04/11
Re: [Freesurfer] PetSurfer: Can kinetic modeling be applied to PET data with single frame?
WONG Wan Wa
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2024/04/10
Re: [Freesurfer] Recon-all stuck at topology fix
Fischl, Bruce R.,PHD
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2024/04/10
Re: [Freesurfer] Recon-all stuck at topology fix
Bhole, Salil
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2024/04/10
[Freesurfer] Probabilistic segmentation neonates
Hamza Kebiri
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2024/04/10
Re: [Freesurfer] PetSurfer: Can kinetic modeling be applied to PET data with single frame?
WONG Wan Wa
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2024/04/10
[Freesurfer] NextBrain Segmentation PyTorch-GPU Compatibility Error
AmirHussein Abdolalizadeh
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2024/04/09
[Freesurfer] Several faculty jobs at University of Chicago in Aging + Alzheimer's and related dementias
Adam Martersteck
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2024/04/09
[Freesurfer] Invitation to free symposium “What is brain connectivity?”
Rullmann, Michael
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2024/04/09
Re: [Freesurfer] PetSurfer: Can kinetic modeling be applied to PET data with single frame?
Rullmann, Michael
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2024/04/09
[Freesurfer] vertices are -1 when using vol2label
Sam W
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2024/04/09
Re: [Freesurfer] PetSurfer: Can kinetic modeling be applied to PET data with single frame?
WONG Wan Wa
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2024/04/08
Re: [Freesurfer] recon-all exits with errors
William Graves
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2024/04/08
Re: [Freesurfer] Easyreg > cortical parcels missing after SynthSeg with --parc option ?
Hoffmann, Malte,PhD
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2024/04/08
Re: [Freesurfer] recon-all exits with errors
Huang, Yujing
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2024/04/08
Re: [Freesurfer] Question on using thalseg_1.1.h5
Tregidgo, Henry
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2024/04/07
Re: [Freesurfer] Easyreg > cortical parcels missing after SynthSeg with --parc option ?
r04458005
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2024/04/06
Re: [Freesurfer] Easyreg > cortical parcels missing after SynthSeg with --parc option ?
Iglesias Gonzalez, Juan E.