try using the aseg.auto_noCCseg.mgz as input
On Thu, 27 May 2010, Gonzalo Rojas
wrote:
Hi Bruce:
I test the command "mri_cc -aseg aseg.mgz -o test.mgz -t 5 patient", but I
get the message "mri_cc: volume
/usr/local/freesurfer/subjects/patient/mri/aseg.mgz already has CC in it"...
How can get the volumetry of corpus callosum in 5 sagital sliced for
example ?...
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Las Condes Clinic
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
www.clc.cl
El 19-03-2010 12:59, Bruce Fischl escribió:
mri_cc takes a '-t <thickness>' parameter, which is 2 by default
(meaning the cc goes out 2 slices in either direction from the midline).
Run it with -t 5 and it should do what you want
On Fri, 19 Mar 2010, Gonzalo Rojas wrote:
Hi:
How can I get the volumetry of the corpus callosum in only some
sagital slices ?... For example, 5 slices to the left and 5 to the right
the medial line ?...
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica Las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
www.clc.cl
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