the recon-all.log does not show anything missing, however it is apparent now that it definitly didn't finish. For most of my subjects it stopped running at:
Left_Cerebellum_Cortex (8): linear fit = 1.08 x + 0.0 (26249 voxels, overlap=0.958) Left_Cerebellum_Cortex (8): linear fit = 1.08 x + 0.0 (26249 voxels, peak = 64), gca=64.5 gca peak = 0.12723 (61) mri peak = 0.03761 (63) Right_Cerebellum_Cortex (47): linear fit = 1.02 x + 0.0 (27939 voxels, overlap=0.963) Right_Cerebellum_Cortex (47): linear fit = 1.02 x + 0.0 (27939 voxels, peak = 63), gca=62.5 gca peak = 0.22684 (88) mri peak = 0.10929 (95) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (8347 voxels, overlap=0.476) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (8347 voxels, peak = 95), gca=94.6 gca peak = 0.21067 (87) mri peak = 0.11382 (93) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (7525 voxels, overlap=0.506) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (7525 voxels, peak = 94), gca=93.5 ****STOPPED RUNNING HERE ******* if anyone can recognize this step so I don't have to run full recon again that would be great or any ideas as to why this happend best, Anson K. University of Michigan On Mon, 12 Jul 2010 11:39:10 -0400 (EDT), Allison Stevens <[email protected]> wrote: > What does the recon-all.log file in the stats dir show for the steps it > missed? > Allison _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
