Hello FreeSurfers, By reading through the wiki, it seems like the skullstrip command uses nu.mgz and T1.mgz, but is there a way to just run the skullstrip command without nuintensitycor or normalization? I have MRIs of a few subjects in which the intensity normalization seems to not have beneficial for preparing the MRIs for skullstripping. I've attached the snapshot of brainmask.mgz to this email.
Thanks in advance. Best, Lisa ______________________________ Lisa F. Akiyama Research Study Assistant Institute for Learning & Brain Sciences (I-LABS) University of Washington P Please consider the environment before printing this e-mail.
<<attachment: brainmask.jpg>>
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