Messages by Thread
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[Freesurfer] Hybrid combination
Maja Nikolova
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[Freesurfer] PetSurfer, PVC uptake of ROI relative to Pons
zeno Zeng
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[Freesurfer] PhD position available/sensory thalamus/developmental dyslexia
Katharina von Kriegstein
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[Freesurfer] BEDPOSTX Tracula Error
Daniel Salinas
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[Freesurfer] Efficient printing of freeview screenshots through freeview [HPC]
Camilo Castelblanco Riveros
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[Freesurfer] NextBrain with 333 labels
Woo-Suk Tae
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[Freesurfer] FreeSurfer - extract rigid parameters from .lta file
[email protected]
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Re: [Freesurfer] Freesurfer - skull stripping error
William Baare
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[Freesurfer] Qt platform and lta_convert error
Mohammad Amin Khodadadegan
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[Freesurfer] dev builds available for rocky Linux and silicon MacOS (M1, M2, M3 processors)
fsbuild
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[Freesurfer] morphometry protocol - cross site/platform?
Mira Michelle Raman
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[Freesurfer] Repost: NextBrain Segmentation PyTorch-GPU Compatibility Error
AmirHussein Abdolalizadeh
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Re: [Freesurfer] infantFS: expected outputs
Zollei, Lilla,Ph.D.
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[Freesurfer] fresurfer on silicon macs (was Re: Trying to run freeview via Docker/XQuartz and it just aborts
fsbuild
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[Freesurfer] Trying to run freeview via Docker/XQuartz and it just aborts
Belakovski, Nickolai
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Re: [Freesurfer] Questions re Freesurfer editing
Douglas N. Greve
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[Freesurfer] Hippocampal segmentation on two sets of MRI with different resolution
Jacob Bunyamin
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Re: [Freesurfer] Running Freeview from Ubuntu (on WSL)
fsbuild
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[Freesurfer] BA1_exvivo does not exist in SUBJECTS_DIR fsaverage
Sambamoorthy, Sowmya
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[Freesurfer] Running Freeview from Ubuntu
Barsotti, Ercole
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[Freesurfer] FreeSurfer License Error
Barsotti, Ercole
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[Freesurfer] Transforming aseg.mgz to native anatomical space - transform files absent
Christine Farrugia
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[Freesurfer] trac-all longitudinal error
Nelson, Eric (Campus)
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Re: [Freesurfer] Hippocampus Subfields Stats (FreeSurfer v7.3.2)
Nolan, Jackson
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[Freesurfer] Visualizing brain features
Banerjee, Tania
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[Freesurfer] Ongoing issue with Mac
Alisha Davis
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[Freesurfer] Error in dt_recon
Ramesh Babu
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[Freesurfer] Freesurfer 7.4.0 and CUDA versions (was Re: (no subject))
fsbuild
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[Freesurfer] NIH R25 Course : Training in Advanced Statistical Methods in Neuroimaging and Genetics, Salt Lake City, Utah, April 7-18, 2025.
ROBERT CARY WELSH
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[Freesurfer] Installer for Silicon M1, M2, M3 Macs (was Re: Freesurfer for MacOS))
fsbuild
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[Freesurfer] Freesurfer for MacOS
Alisha Davis
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[Freesurfer] installation on Linux server incompatible with python2?
Gowin, Joshua
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[Freesurfer] UNABLE TO MAKE EDITS AFTER SIMNIBS
Cesar Zabdiel Gutierrez Mendoza (czgtrrzm)
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[Freesurfer] Question on lateral ventricle segmentation
Necati Emre Şahin
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[Freesurfer] mri_synthseg on Mac M3
Valerian Altersberger
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[Freesurfer] How do we account for different scanner/acquisition parameters in the FreeSurfer longitudinal pipeline?
Yoonho Hwang
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[Freesurfer] Using a newer version of FS for longitudinal processing
Bronwyn Overs
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[Freesurfer] Combining left and right hemisphere segmentation files
Mengjie Huang
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[Freesurfer] SAMSEG - hanging for FLAIR lesion segmentation
Stefano Cerri
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Re: [Freesurfer] cortical thickness measurements
AJ
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[Freesurfer] SAMSEG - hanging for FLAIR lesion segmentation
Sravanthi Upadrasta
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[Freesurfer] Obtaining Detailed Lateral Ventricle Segmentati
Necati Emre Şahin
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[Freesurfer] License issues
Le Prieult , Yéléna
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Re: [Freesurfer] Error in SegmentSubfieldsT1Longitudinal (line 2148)
Iglesias Gonzalez, Juan E.
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[Freesurfer] atlas for subregional precentral gyrus
Woo-Suk Tae
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[Freesurfer] When release a version for ubuntu24?
Chunling Hu
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Re: [Freesurfer] Help with samseg
Cacciaguerra, Laura, M.D., Ph.D.
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[Freesurfer] petsurfer using brainstem subfields
Sneha Pandya
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[Freesurfer] Question on hippocampus segmentation algorithm
Savoia, Alice (Stud. FPN)
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[Freesurfer] FSGD Error
Recht, Grace Owen
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[Freesurfer] Combining masks mri_binarize
Sorby-Adams, Annabel
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[Freesurfer] Extracting cortical thickness from a sphere with different coordinates for different participants.
Michel , Léa
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[Freesurfer] Freesurfer Longitudinal analysis
De Giorgi, Sara
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Re: [Freesurfer] Longitudinal base processing error
Douglas N. Greve
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[Freesurfer] Recon-all -all for many MRI sequences?
김유진
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[Freesurfer] petsurfer questions - No PVC stats file in the similar format as gtm.stats.dat
Sneha Pandya
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[Freesurfer] TRACULA with multi-shell DWI
Fromm, Anna
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[Freesurfer] Ubuntu 24.04 compatibility? (libc6 < 2.36, libncurses5)
Hunter Buchanan
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Re: [Freesurfer] recon-all terminates at fix topology rh step
fsbuild
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[Freesurfer] How to change mri_convert --conform to use another flag while running recon-all
Jeiran Choupan
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[Freesurfer] PetSurfer: how to convert nopvc.nii.gz to a format like gtm.stats.dat?
WONG Wan Wa
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[Freesurfer] mri_easyreg
Sara Ponticorvo
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[Freesurfer] freesurfer version 6 on Debian
Gregory Book
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[Freesurfer] PetSurfer: PET SUVR analysis
WONG Wan Wa
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[Freesurfer] Save (any/open) path in freeview
Marianne Duyck
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[Freesurfer] mri_watershed Error: GLOBAL region of the brain empty !
李志豪
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[Freesurfer] mideface: facemask not found
Aaron Tanenbaum
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[Freesurfer] Hypothalamic region segmentation
Raphaela C
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[Freesurfer] Inconsistency between mean cluster cortical thickness value and lme_lowessPlot
Dan Levitas
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[Freesurfer] making the face mask thicker mideface
Aaron Tanenbaum
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[Freesurfer] Calculating gray matter volume and BPF from Samseg output
Maaike Romme
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[Freesurfer] Older tksurfer and tkmedit (FS version 5.0.0) fail to launch: glut issue?
Raij, Tommi A.
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[Freesurfer] Extract surface vertex IDs from significance map
Dan Levitas
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[Freesurfer] Extract surface vertex IDs from significance map
Dan Levitas
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[Freesurfer] WMH-Synthseg Bad CPU type in Executable
Vaughn, Stephen
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[Freesurfer] Comparison of "segment_subregions" and "recon-all"
Yoonho Hwang
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[Freesurfer] mri_easyreg --help error: zsh : illegal hardware instruction mri_easyreg --help
Yang, Yaozhi
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[Freesurfer] Questions about FreeSurfer's longitudinal pipeline prior to longitudinal analysis
Yoonho Hwang
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[Freesurfer] Issues with parallel processing trac-all bedp step
De Giorgi, Sara
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[Freesurfer] Question/potential bug regarding mri_convert and .gca files
Siegel, Nys Tjade
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[Freesurfer] Inquiry on Calculation Methods for Folding Index and Intrinsic Curvature Index in mris_anatomical_stats
littlepotato
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[Freesurfer] Question: Recon-all Using T1/T2 Mutual Information
Edwards, Vincent
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[Freesurfer] Data Analyst Position at University of Miami Miller School of Medicine
Otero Ospina, Andrea
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[Freesurfer] Inquiry About Calculation of Integrated Rectified Gaussian Curvature in mris_anatomical_stats
littlepotato
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[Freesurfer] ssistance needed: Aligning existing FreeSurfer segmentation with new T1 image
Owusu-Ansah, Maame
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[Freesurfer] Assistance needed: Aligning existing FreeSurfer segmentation with new T1 image
Owusu-Ansah, Maame
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[Freesurfer] Interpreting LME results with multi-row contrasts
Dan Levitas
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[Freesurfer] Issues for longitudinal pipeline-based process
Yoonho Hwang
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[Freesurfer] FreeSurfer Question
Selena Gangaram
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[Freesurfer] FreeSurfer in fmriprep
Tengwen Fan
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[Freesurfer] ConcatenateSubregionsResults
Zeng, Victor (BIDMC - Keshavan - Psychiatry)
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[Freesurfer] Open question to everyone about publicly available MRI datasets
Zeng, Victor (BIDMC - Keshavan - Psychiatry)
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[Freesurfer] Steps for Correcting Dura Using Multi-echo MPRAGE
KEITH JONES
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[Freesurfer] Scalp mask
Francesco Lomi
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[Freesurfer] Negative voxel ranges
ERNEST KISSI
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Re: [Freesurfer] Very large segmentation errors with recon-all
Douglas N. Greve
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Re: [Freesurfer] Functional connectivity: sig.nii.gz values seem off
Douglas N. Greve