Hi Freesurfers,
I'm trying to update our analysis for Stable 5, and I'm having some
trouble trying to recreate our current Stable 4 version (espcially
since I have not yet made a gui-less analysis). The command I used
was:
mkanalysis-sess -analysis fmcsm5_functionals_Stable5 -TR 2 -paradigm
paradigm -event-related -funcstem fmcsm5 -motioncor -inorm -polyfit 2
-mcextreg -nconditions 9 -timewindow 24 -prestim 4 -TER 2 -autostimdur
However, it's not accepting the -motioncor flag, and I'm not sure what the
correct replacement is.
For reference, I'm trying to replicate the analysis as close to the
original, which has the following analysis.info file:
analysis fmcsm5_functionals
TR 2.000000
fsd bold
funcstem fmcsm5
inorm 100.000000
runlistfile
tpexclude
parname paradigm
designtype event-related
nconditions 9
Condition 1 Condition01
Condition 2 Condition02
Condition 3 Condition03
Condition 4 Condition04
Condition 5 Condition05
Condition 6 Condition06
Condition 7 Condition07
Condition 8 Condition08
Condition 9 Condition09
and analysis.cfg text
-extreg mcextreg
-nextreg 3
-delay 0.000000
-TER 2.000000
-polyfit 2
-gammafit 2.250000 1.250000
-gammaexp 2.000000
-timewindow 24.000000
-prestim 4.000000
-autostimdur
Thank you,
Adam Nitenson, B.S.
Brain Genomics Lab
Massachusetts General Hospital
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