Hi Jim Have you been able to view other surfaces in tksurfer? The situation you describe sounds normal except for the display issue (e.g. The thalamus should be interior to the white surface) Cheers Bruce
On Apr 22, 2011, at 12:28 PM, jim kroger <jkk...@gmail.com> wrote: > Hello, I am following the sequence in the "FreeSurfer Troubleshooting > Reconstruction Work Flow" instructions, and am at step 8, > FsTutorial/WhiteMatterEdits. It looks like the thalamus and corpus callosum > are included as white matter, and the pial surface surrounds some subcortical > structures. Assuming this is not correct, I decided to look at the inflated > surface as suggested in the referenced page " Making Edits to the White > Matter." Unfortunately when I issue: > > tksurfer wm1_edits_before rh inflated > > I only see what looks like a very small fraction of an egg shell for the rh, > and nothing for lh. Can I check somehow to see why I have almost no inflated > brain? > > Thanks, > Jim > > > -- > Cell: 575-571-8274 > Email: jkk...@gmail.com > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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