Hi Tanja yes, there is really no visible extreme capsule white matter, I guess because it is so thin. If you are trying to fix the surfaces you will want to edit the wm.mgz though, not the aseg.mgz.
cheers Bruce On Thu, 5 May 2011, Tetiana Dadakova wrote: > Dear Bruce, > > For some of my subjects the segmentation of putamen "sticks" to the > cortex (please look at attached image "before.jpg"). Therefore, I do > some manual corrections that affect the cortex (please look at > attached image "after.jpg"). > > How should I proceed after this kind of manual correction? > > Thank you, > Tanja. > > On Wed, Mar 30, 2011 at 3:31 PM, Bruce Fischl > <[email protected]> wrote: >> Hi Tanja >> unless the editing would change the cortex, you don't need to worry about it >> >> Bruce >> On Wed, 30 Mar 2011, Tetiana Dadakova wrote: >> >>> Dear FreeSurfer list, >>> >>> I am making some manual correction to subcortical structures using >>> Edit Segmentation Tool. >>> And my question is: how should I proceed after saving aseg.mgz? Should >>> I re-run autorecon2 with some options? >>> >>> Thank you, >>> Tanja. >>> _______________________________________________ >>> Freesurfer mailing list >>> [email protected] >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
