Hello, I am having trouble doing a recon-all of my data.
pbsubmit -m chinsel -c 'recon-all -s DODASD001 -all -i /cluster/archive/295/siemens/TrioTim-35006-20111026-155248-065000/364000-000015-000001.dcm -mail chin...@nmr.mgh.harvard.edu' Here is the error: ERROR: no run data found in /autofs/cluster/manoach/dod/subjects/DODASD001/mri. Make sure to have a volume called 001.mgz in /autofs/cluster/manoach/dod/subjects/DODASD001/mri/orig. If you have a second run of data call it 002.mgz, etc. I usually do the recon all through launchpad first before any other preprocessing, and hadn't had a problem before? Not sure why this is the case this time. What step should be done before this to get the data in the mri? My subjects_dir is /cluster/manoach/dod/subjects Thanks so much! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
