In the log file, it says that you did not run it with the -i. Check your command line. doug
Chindhuri Selvadurai wrote: > Hello, > > I am having trouble doing a recon-all of my data. > > pbsubmit -m chinsel -c 'recon-all -s DODASD001 -all -i > /cluster/archive/295/siemens/TrioTim-35006-20111026-155248-065000/364000-000015-000001.dcm > -mail chin...@nmr.mgh.harvard.edu' > > Here is the error: > ERROR: no run data found in > /autofs/cluster/manoach/dod/subjects/DODASD001/mri. Make sure to have a > volume called 001.mgz in > /autofs/cluster/manoach/dod/subjects/DODASD001/mri/orig. If you have a > second run of data call it 002.mgz, etc. > > I usually do the recon all through launchpad first before any other > preprocessing, and hadn't had a problem before? Not sure why this is the > case this time. What step should be done before this to get the data in > the mri? > > My subjects_dir is /cluster/manoach/dod/subjects > > Thanks so much! > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
