Hi, experts. We need to use FreeSurfer to process some analyze image data. More specifically, we want to extract the hippocampus surfaces. We know that FreeSurfer has done subcortical segmentation during -autorecon2 stage in recon-all. We have checked the resulting aseg.mgz file and found that it contains all substructures. So we wonder if there is a way to get the separated .mgz files for each substructure or could FreeSurfer generate the subcortical surfaces? Thanks a lot.
Best, Jie
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