Messages by Thread
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[Freesurfer] Transformed geometry does not match
Yasmine Salman
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[Freesurfer] Issue with cortical data extraction for mkanalysis-sess
O'Dor, Sarah
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[Freesurfer] negative values converting mgz files to nifty
Nina Rouhani
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[Freesurfer] Bug in mri_convert reslice-like with 4D images
Iglesias Gonzalez, Juan E.
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[Freesurfer] Incoporating synthstrip and synthseg into recon-all
Dan Levitas
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[Freesurfer] fs_temp_file: Command not found
Cameron, Jack
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Re: [Freesurfer] mri_fuse_segmentation error: could not open file
Tommaso Cusolito S319624
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[Freesurfer] fmriprep and freesurfer license
Patterson, Dianne K - (dkp)
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[Freesurfer] How to get the parcellations to the initial space as before running recon all
Reji, A. (Amal, Student M-EE)
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[Freesurfer] Call for applications: LINC fellows program 2024-25
Yendiki, Anastasia
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[Freesurfer] License for FreeSurfer 5.x
Rafael Navarro
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[Freesurfer] SynthSR problem
Tabasi, Farhad
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Re: [Freesurfer] Recon-all for a common template
Chen Yang
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[Freesurfer] freesurfer coordinate systems error: mismatch region hippocampal atlas in matlab and freeview for high resolution
Le, Jarod
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[Freesurfer] MAC compatibilty
Silvia Montanari
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[Freesurfer] Research Technician positions in the FreeSurfer lab
Player, Allison A. Stevens
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[Freesurfer] squirrel data sharing format available in beta
Gregory Book
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[Freesurfer] run_samseg: Optimizer: maximalDeformation is too small; stopping; killed
Ringki Marie Siewert
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[Freesurfer] Intensity affected after using -c flag in mri_convert
ERNEST KISSI
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Re: [Freesurfer] fspalm error
Stefano Delli Pizzi
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[Freesurfer] Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus
Ahsan Ali
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[Freesurfer] PhD candidate position - high-resolution imaging of the human claustrum
Zaretskaya, Natalia (natalia.zaretsk...@uni-graz.at)
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[Freesurfer] Probability density function
Jingjing Liu
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[Freesurfer] Group Stats for hipposubfields, brainstem and amygdalar
Carina Obermüller
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[Freesurfer] how to resolve recon-all stopping at fill step
Dong, Yilei
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[Freesurfer] Request to Edit Page (if possible)
Emily Popa
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[Freesurfer] Freesurfer on a high-performance cluster (HPC) - MATLAB runtime
Camilo Castelblanco Riveros
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[Freesurfer] Unequal size groups
stdp82
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[Freesurfer] mri_watershed Error: read failed
Schroder, Kirsten
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[Freesurfer] Valid options.txt file for mris_pmake (and maybe .dsh.yml too)
Garikoitz Lerma-Usabiaga
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[Freesurfer] error using mri_em_register
Michal Zamberg-Elad
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[Freesurfer] Issue related to converting .nii.gz file to .mgz using FreeSurfer's mri_convert
Tsigaras, Thanos
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[Freesurfer] Hippocampus subfield LUT
karl landheer
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[Freesurfer] Harmonization (Site/Scanner) for FreeSurfer Area Data
Tejaswi D. Sudhakar
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[Freesurfer] Subcortical surfaces from volume features.
Sam Maddox (CMP - Postgraduate Researcher)
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Re: [Freesurfer] Contrast files - 2 groups, 4 covariates
Liliana Wu
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[Freesurfer] mri_segment_hypothalamic_subunits 7.4.1 issue
Antonio Di Renzo
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[Freesurfer] Contrast files - 2 groups, 4 covariates
Liliana Wu
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[Freesurfer] MCR install for parcellation
Antonio Di Renzo
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[Freesurfer] Postdoc Positions in Cognitive Neuroscience/ Neuroimaging Genomics
X K
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[Freesurfer] Incorporating hi-res T2w image in longitudinal pipeline
Raikes, Adam C - (adamraikes)
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[Freesurfer] outcome directions of longitudinal two stage model
L
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Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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[Freesurfer] ERROR: cannot find AntsN4BiasFieldCorrectionFs in path
Christine Farrugia
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Re: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt
Huang, Yujing
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[Freesurfer] INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE IN HEALTHCARE (AIiH)
Jiaxiang ZHANG
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[Freesurfer] SynthSR Changes Dimension
AmirHussein Abdolalizadeh
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Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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[Freesurfer] surface and cortical thickness normalization
yunus soleymani
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[Freesurfer] Difference between 2 ways to set up fsgd file and contrasts
Lydia Chung
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Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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[Freesurfer] brain volumes normalization
yunus soleymani
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Re: [Freesurfer] [FreeSurfer] recon-all exited with error - watershed error
Krystal Xiwing Yau
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[Freesurfer] Registration in PETSurfer
Ruben Dörfel
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[Freesurfer] Error: Label FG1.mpm.vpnl does not exist in SUBJECTS_DIR fsaverage!
Pamela González Méndez
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[Freesurfer] Problem running recon-all
Gregory Book
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[Freesurfer] FW: Infant Freesufer auto-recon failure
Lemley, Rachel
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[Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis
Dan Levitas
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[Freesurfer] Figures for publication
Asuka Toyofuku
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[Freesurfer] Retinotopy error computing contrast matrices
Mesquita, Tiago
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[Freesurfer] Understanding registration with mri_synthmorph
Antoine Royer
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[Freesurfer] Postdoc position: MRI of brain networks in developmental neuropsychiatry
kathrine
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[Freesurfer] 250 Voxels Won't Stay Erased from wm.mgz Upon Relaunch
Smith, Thomas
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Re: [Freesurfer] recon-all process still not finishing properly
Douglas N. Greve
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[Freesurfer] GLM Using 2 Surfaces - Thickness and Area
Tejaswi D. Sudhakar
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[Freesurfer] Default intensity values for gray and white matter
Lokhandwala, Sanna
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[Freesurfer] gunzip error in load_mgh.m when file path contains spaces
Tyler Slouf
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Re: [Freesurfer] MRInormFindControlPoints
Fischl, Bruce R.,PHD
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[Freesurfer] Error using mris_transform in Freesurfer 7.4.1
Noemí Hostalet
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Re: [Freesurfer] FreeSurfer Download and Install Error: Segmentation Fault
fsbuild
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[Freesurfer] FreeSurfer Download and Install Error: Segmentation Fault
Angenelle Rosal
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[Freesurfer] Freeview problems
Savoia, Alice (Stud. FPN)
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[Freesurfer] Skin-Skull-Brain segmentation
XIE Jing
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Re: [Freesurfer] I've tried what to do. But, still freeview doesn't work
Dicamillo, Robert
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Re: [Freesurfer] freesurfer doesn't work
fsbuild
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Re: [Freesurfer] WMH-SynthSeg - Torch module not found
fsbuild
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[Freesurfer] BBRegistration with FSL topup
Gianluca Guglietti
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[Freesurfer] surface-based filtering
Jiaen Liu
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[Freesurfer] Surface vertex tkr-ras to native T1 RAS without volume files
Dipterix Wang
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Re: [Freesurfer] Recon-all stuck at topology fix
Bhole, Salil
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[Freesurfer] Probabilistic segmentation neonates
Hamza Kebiri
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[Freesurfer] NextBrain Segmentation PyTorch-GPU Compatibility Error
AmirHussein Abdolalizadeh
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[Freesurfer] Several faculty jobs at University of Chicago in Aging + Alzheimer's and related dementias
Adam Martersteck
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[Freesurfer] Invitation to free symposium “What is brain connectivity?”
Rullmann, Michael
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[Freesurfer] vertices are -1 when using vol2label
Sam W
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Re: [Freesurfer] recon-all exits with errors
Huang, Yujing
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Re: [Freesurfer] Recon-All Clinical Stream: Image Output Observations in Creating ENIGMA QC Images
Iglesias Gonzalez, Juan E.
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[Freesurfer] question about infantfreesurfer
Knut J Bjuland
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[Freesurfer] editing segmentations from recon-all-clinical
Agata Wolna
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[Freesurfer] Enorm threshold for dynamic PET images
Sneha Pandya
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[Freesurfer] Question on using thalseg_1.1.h5
Georgios Argyropoulos
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[Freesurfer] Support for GPU on Freesurfer
Camargo, Aldo
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[Freesurfer] Question about mris_compute_lgi error: /scratch/tp94c480ef_a005_4f9a_85af_ab56b34400cd.load_mgh.m.mgh: Permission denied")
XinRan Wu
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Re: [Freesurfer] [FreeSurfer] Lesion detection at different thresholds
fsbuild
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[Freesurfer] recon-all mri_convert error: extra argument ("/usr/local/freesurfer/subjects/maoyipeng/mri/orig/001.mgz")
彭翠仪