Hi Kiely - It's strange that bepostx would create ph2samples and not ph1samples. These are the orientation angles for the 2 anisotropic compartments, so if there's a 2nd there should be a 1st. Have you asked about it on the FSL list?
a.y On Thu, 22 Dec 2011, Kiely Donnelly wrote: > Hi Everyone -- > > I've been having difficulty getting Tracula to run smoothly on our cluster. > Similar to others on the listserv, the bedpost step > was not creating the necessary files causing an error during the -path step. > Based on previous posts, I ran bedpostx on the dmri > directory. This initially seemed to work (I no longer received the message "1 > slice processed" over and over), but for some reason > the merged_ph1samples.nii.gz file is still not being created and I continue > to run into an error when I run -path. It does create > a merged_ph2samples.nii.gz output file. > > Any help would be greatly appreciated. > > Thanks, > > Kiely > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
