[freesurfer@occipital dmri.bedpostX]$ ls diff_slices/data_slice_0002/ dyads1.nii.gz f1samples.nii.gz logfile mean_dsamples.nii.gz mean_f1samples.nii.gz mean_S0samples.nii.gz ph1samples.nii.gz th1samples.nii.gz
Come to think of it, when I ran bedpostx, it only output "1 slice processed", but repeated 70 times, or however many slices there are. The data is from a Siemens 3T, by the way. On 03/23/2012 01:16 PM, Anastasia Yendiki wrote: > > What's in the diff_slices directory? That's a temporary directory that > bedpostx creates and that gets deleted after the results get "merged". > So my guess would be that bedpostx didn't finish processing. > > On Fri, 23 Mar 2012, Chris Watson wrote: > >> Hello, I successfully ran trac-all -bedp, and when I run the next step I >> get the following error: >> >> Loading BEDPOST parameter samples from >> /raid2/fmri8/study/volumetric/freesurfer/control/subject/dmri.bedpostX >> niiRead(): error opening file >> /raid2/fmri8/study/volumetric/freesurfer/control/subject/dmri.bedpostX/merged_ph1samples.nii.gz >> >> >> ERROR: Could not read >> /raid2/fmri8/study/volumetric/freesurfer/control/subject/dmri.bedpostX/merged_ph1samples.nii.gz >> >> >> Linux occipital.tch.harvard.edu 2.6.18-308.1.1.el5 #1 SMP Wed Mar 7 >> 04:16:51 EST 2012 x86_64 x86_64 x86_64 GNU/Linux >> >> trac-paths exited with ERRORS at Fri Mar 23 11:24:11 EDT 2012 >> >> Word too long. >> ------------------------------------------------------------------------ >> >> Indeed, the "merged" file doesn't exist. I am running Freesurfer 5.1.0 >> and FSL 4.1.9. >> Here's what's in the dmri.bedpostX directory: >> >> [freesurfer@occipital control]$ ls murphy_p/dmri.bedpostX/ >> bvals bvecs commands.txt diff_slices logs monitor >> nodif_brain_mask.nii.gz xfms >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
