Hi Anastasia,
My mistake with the expiration date.
Please try with this link:
https://transfert.inria.fr/fichiers/0b1013b5de0fc0cc9e8dd2d6101a054b/testData.tar.gz

Thanks!

Viviana Siless
--
Parietal Team, INRIA Saclay
Neurospin, Centre CEA de Saclay
91191 Gif sur Yvette – FRANCE


On Tue, Apr 17, 2012 at 6:03 PM, Anastasia Yendiki <
ayend...@nmr.mgh.harvard.edu> wrote:

>
> Hi Viviana - I was away from email for some time and it looks like the
> uploaded file has expired. Could you reupload it? I apologize for the delay.
>
> Thanks,
> a.y
>
>
> On Fri, 6 Apr 2012, Viviana Siless wrote:
>
>  Hi Anastasia,
>> Here is the data: https://transfert.inria.fr/**fichiers/**
>> 4531ddb4948dff7223febc5a5b4f7e**7d/testData.tar.gz<https://transfert.inria.fr/fichiers/4531ddb4948dff7223febc5a5b4f7e7d/testData.tar.gz>Let
>>  me know if you have any
>> trouble.
>> I changed to the other track-all, and the error is the same.
>> Please let me know if I'm doing anything wrong!
>> Thank you!
>>
>> Viviana Siless
>> --
>> Parietal Team, INRIA Saclay
>> Neurospin, Centre CEA de Saclay
>> 91191 Gif sur Yvette – FRANCE
>>
>>
>> On Thu, Apr 5, 2012 at 7:38 PM, Anastasia Yendiki <
>> ayend...@nmr.mgh.harvard.edu> wrote:
>>
>>      Hi Viviana - If you upload this data set I'm happy to look at it.
>>
>>      Also, I strongly recommend getting the updated version of trac-all
>> from the wiki (I'm guessing from the log file that
>>      you're probably not using that?) See 2012/01/09 update here:
>>             
>> http://surfer.nmr.mgh.**harvard.edu/fswiki/Tracula<http://surfer.nmr.mgh.harvard.edu/fswiki/Tracula>
>>
>>      Thanks,
>>      a.y
>>
>>
>> On Wed, 4 Apr 2012, Viviana Siless wrote:
>>
>>      Hello,
>>      I'm trying to run trac-all prec and I'm getting a segmentation fault
>> error.
>>
>>      Loading streamlines from /media/vivi/code/freesurfer/**
>> trctrain/trc032/dlabel/mni/lh.**cst_AS.flt.trk
>>      Loading streamline start ROI from /media/vivi/code/freesurfer/**
>> trctrain/trc033/dlabel/mni/lh.**cst_AS_roi1.flt.nii.gz
>>      Loading streamline end ROI from /media/vivi/code/freesurfer/**
>> trctrain/trc033/dlabel/mni/lh.**cst_AS_roi2.flt.nii.gz
>>      Loading streamlines from /media/vivi/code/freesurfer/**
>> trctrain/trc033/dlabel/mni/lh.**cst_AS.flt.trk
>>      INFO: Rejected 0 streamlines for straying off mask
>>      INFO: Rejected 0 streamlines for reversing direction
>>      Segmentation fault
>>      Linux vivi-ThinkStation-C20X 2.6.38-8-generic #42-Ubuntu SMP Mon Apr
>> 11 03:31:24 UTC 2011 x86_64 x86_64 x86_64
>>      GNU/Linux
>>
>>      trac-preproc exited with ERRORS at Wed Apr  4 18:24:21 CEST 2012
>>
>>
>>      - When I look at the trak-all.error I see this error:
>>
>>      ------------------------------
>>      SUBJECT 000000112288Proc
>>      DATE Wed Apr  4 18:24:21 CEST 2012
>>      USER vivi
>>      HOST vivi-ThinkStation-C20X
>>      PROCESSOR x86_64
>>      OS Linux
>>      Linux vivi-ThinkStation-C20X 2.6.38-8-generic #42-Ubuntu SMP Mon Apr
>> 11 03:31:24 UTC 2011 x86_64 x86_64 x86_64
>>      GNU/Linux
>>      $Id: trac-preproc,v 1.17.2.5 2011/05/20 06:51:51 ayendiki Exp $
>>      /media/vivi/code/freesurfer/**bin/trac-preproc
>>      PWD /media/vivi/code/freesurfer
>>      CMD /media/vivi/code/freesurfer/**bin/dmri_train --outdir
>> /media/vivi/images/freesurfer/**000000112288Proc/dlabel/mni
>>      --out
>>      lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt
>> lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt
>>      lh.ilf_AS_avg33_mni_flt
>>      rh.ilf_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt
>> fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt
>>      rh.atr_PP_avg33_mni_flt
>>      lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt
>> lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt
>>      lh.slfp_PP_avg33_mni_flt
>>      rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt
>> rh.slft_PP_avg33_mni_flt --slist
>>      /tmp/subj33.000000112288Proc.**16360.txt --trk
>>      dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk
>> dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk
>>      dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk
>> dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk
>>      dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk
>> dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk
>>      dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk
>> dlabel/mni/lh.slfp_PP.flt.trk
>>      dlabel/mni/rh.slfp_PP.flt.trk
>>      dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg
>> dlabel/mni/aparc+aseg.nii.gz --cmask
>>      dlabel/mni/cortex+2mm.nii.gz
>>      --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois
>> dlabel/mni/lh.cst_AS_roi1.flt.**nii.gz
>>      dlabel/mni/lh.cst_AS_roi2.flt.**nii.gz
>>      dlabel/mni/rh.cst_AS_roi1.flt.**nii.gz
>> dlabel/mni/rh.cst_AS_roi2.flt.**nii.gz dlabel/mni/lh.unc_AS_roi1.flt.**
>> nii.gz
>>      dlabel/mni/lh.unc_AS_roi2.flt.**nii.gz
>> dlabel/mni/rh.unc_AS_roi1.flt.**nii.gz dlabel/mni/rh.unc_AS_roi2.flt.**
>> nii.gz
>>      dlabel/mni/lh.ilf_AS_roi1.flt.**nii.gz
>> dlabel/mni/lh.ilf_AS_roi2.flt.**nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.**
>> nii.gz
>>      dlabel/mni/rh.ilf_AS_roi2.flt.**nii.gz
>> dlabel/mni/fmajor_PP_roi1.flt.**nii.gz dlabel/mni/fmajor_PP_roi2.flt.**
>> nii.gz
>>      dlabel/mni/fminor_PP_roi1.flt.**nii.gz
>> dlabel/mni/fminor_PP_roi2.flt.**nii.gz dlabel/mni/lh.atr_PP_roi1.flt.**
>> nii.gz
>>      dlabel/mni/lh.atr_PP_roi2.flt.**nii.gz
>> dlabel/mni/rh.atr_PP_roi1.flt.**nii.gz dlabel/mni/rh.atr_PP_roi2.flt.**
>> nii.gz
>>      dlabel/mni/lh.ccg_PP_roi1.flt.**nii.gz
>> dlabel/mni/lh.ccg_PP_roi2.flt.**nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.**
>> nii.gz
>>      dlabel/mni/rh.ccg_PP_roi2.flt.**nii.gz
>> dlabel/mni/lh.cab_PP_roi1.flt.**nii.gz dlabel/mni/lh.cab_PP_roi2.flt.**
>> nii.gz
>>      dlabel/mni/rh.cab_PP_roi1.flt.**nii.gz
>> dlabel/mni/rh.cab_PP_roi2.flt.**nii.gz dlabel/mni/lh.slfp_PP_roi1.**
>> flt.nii.gz
>>      dlabel/mni/lh.slfp_PP_roi2.**flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.*
>> *flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.**flt.nii.gz
>>      dlabel/mni/lh.slft_PP_roi1.**flt.nii.gz dlabel/mni/lh.slft_PP_roi2.*
>> *flt.nii.gz dlabel/mni/rh.slft_PP_roi1.**flt.nii.gz
>>      dlabel/mni/rh.slft_PP_roi2.**flt.nii.gz --bmask
>>      
>> /media/vivi/images/freesurfer/**000000112288Proc/dlabel/mni/**aparc+aseg_mask.nii.gz
>> --fa
>>      
>> /media/vivi/images/freesurfer/**000000112288Proc/dmri/mni/**dtifit_FA.flt.nii.gz
>> --ncpts 5 --debug
>>
>>
>>      - If I run that command, I get the same (of course):
>>
>>      INFO: Rejected 0 streamlines for straying off mask
>>      INFO: Rejected 0 streamlines for reversing direction
>>      Segmentation fault
>>
>>
>>      Can anybody give me an idea of the problem? I run recon-all and
>> finished without errors.
>>      I attach the log file, the error file, and my dmrirc file. Please
>> let me know if you need anything else.
>>
>>      Thanks in advance!
>>
>>      Viviana Siless
>>      --
>>      Parietal Team, INRIA Saclay
>>      Neurospin, Centre CEA de Saclay
>>      91191 Gif sur Yvette – FRANCE
>>
>>
>>
>>
>>
>>
>> The information in this e-mail is intended only for the person to whom it
>> is
>> addressed. If you believe this e-mail was sent to you in error and the
>> e-mail
>> contains patient information, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>.
>>  If the e-mail was sent to you in error
>> but does not contain patient information, please contact the sender and
>> properly
>> dispose of the e-mail.
>>
>>
>>
>>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Reply via email to