Hi Gabriel,
Once you have the surface in FS binary format (native format), the
command to convert to surface ASCII I believe is mris_convert. Not sure
if mri_convert will work as I think that is for volumes.
With the surface ASCII in hands, then run:
/ srf2obj surface.asc > surface.obj/
Note that the symbol ">" is needed to redirect the converted result to a
new file.
Hope this helps!
All the best,
Anderson
On 03/05/12 10:16, Gabriel Gonzalez Escamilla wrote:
Dear Anderson,
I have seen this message and I'm currently trying to use your script
"srf2obj" to convert to obj format some surfaces created by FS,
firstly i did convert the aseg into a volume in the native space using
"mri_convert", after that, i'd transform the aseg volume into a
surface mgh format (mri_vol2surf), then store the surface as ascii by
using "mri_convert" then I'm using your script to convert that surface
to an object file but always renturns the following error:
aplication srf2obj
gawk: /root/trabajo/freesurfer/bin/srf2obj:2:
' inválido en la expresiónrfer/bin/srf2obj:2: ^ caracter '
I'm working under centOS 4.3
Best Regards,
Gabriel
El 22/02/12, *Anderson Winkler * <andersonwink...@hotmail.com> escribió:
Hi Darshan,
If you'd like to go directly from FreeSurfer .asc to OBJ, the
attached little script should do the trick...
Hope it helps!
All the best,
Anderson
On 21/02/12 16:59, Pedro Paulo de Magalhães Oliveira Junior wrote:
There's a how-to in the FreeSurfer website:
http://surfer.nmr.mgh.harvard.edu/fswiki/HowTo/HowTo
Pedro Paulo Jr.
On Mon, Feb 20, 2012 at 23:32, Manfred G Kitzbichler
<manfr...@nmr.mgh.harvard.edu <manfr...@nmr.mgh.harvard.edu>> wrote:
Hi Darshan,
as Bruce suggested, you can use mris_convert to get an STL file
which you can import into Blender or MeshLab. Both write
Wavefront OBJ files.
- Manfred
On 02/20/2012 07:24 PM, Darshan P wrote:
Hello all,
I was wondering if I can convert the surface outputs to an OBJ
mesh file format .
Since most of the applications are in windows I was hoping if
there is conversion tool to do this .
Regards
Darshan
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