Chris, This is an unusual error. I dont know why nu_correct would be found for some subjects but not others, if its being run on the same platform. I can only think this is a network issue. Is it replicable? nu_correct can be run from the command line.
The intensity normalization issues in v5.1 are related to a change in 5.1 where talairach was run before nu_correct, which doesnt seem to work as well as when run before. this is being changed for v5.2. Nick > I believe this post slipped through the cracks. Anyone have any thoughts > on this nu_correct error. Some subjects ran fine, so it seems to be an > intermittent > problem and not an installation problem. > > Also, is this possibly related to the avi_talairach/intensity > normalization > issues > being discussed in another post? > > Chris Bell > University of Minnesota > > > On Thu, May 31, 2012 at 12:13 PM, <rega0...@umn.edu> wrote: > >> Hello, I am trying to run recon-all using freesurfer 5.1.0. This worked >> on >> most of my subjects, but for about 10 subjects, I got an error: >> >> nu_correct: Command not found >> >> I can see on the archive that several others have run into this problem, >> but I couldn't figure out from the archives what the solution is. I do >> have >> perl installed in usr/bin. >> >> Thanks very much, Katie >> >> -- >> Kathryn R. Cullen, M.D. >> Assistant Professor >> University of Minnesota Medical School >> Department of Psychiatry >> Division of Child and Adolescent Psychiatry >> (612) 273-9825 >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom >> it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
