This is strange, it must be something that is specific to the PPC Mac distribution. Nick is going to have to deal with this, but he won't be back until Mon. Can you wait that long? doug
On 07/31/2012 06:01 PM, Fidel Vila wrote: >> And there is nothing in /Applications/freesurfer/bin? > > There are 357 items in /Applications/freesurfer/bin > >> Are there any files in the other directories? > > Indeed, from /Application/freesurfer/average (50 items in here) to > /Applications/freesurfer/trctrain (35 items) as well as 'LICENSE' > file, 'README' file, etc. Not to forget my user license file (i.e. > .license) > > The executable files missing in /Applications/freesurfer/bin seem to be: > > talairach_avi ;mri_watershed ; > ;mri_segment ;mri_tessellate ;mri_concatenate_lta ;mri_normalize_tp2 > ;mris_smooth ;mris_inflate > ;mris_curvature ;mris_sphere ;mris_fix_topology ;mris_topo_fixer > ;mris_ca_label ;mris_euler_number ;mris_make_surfaces ;mris_register > ;mris_volmask > ;mris_anatomical_stats ;mrisp_paint ;mris_curvature_stats ;mris_calc > ;mri_robust_register ;mri_robust_template ;mri_segstats > > Also, running grep -f /CommandsNotFound.txt (file listing the commands > listed above) /Files_in_Bin.txt (list of 357 items in > /Applications/freesurfer/bin folder) retrieves no matching pattern. > > The list of commands above matches the list of warning errors (i.e. > command not found) when I run recon-all. > >> Do you have permission to install it in that location? > > I do. > > Could this be related to compillation of files for the May 2011 5.1. > stable release for ppc? > > Appreciate your advice and support as I understand ppc machines might > not be one of the highest priorities... > > Regards, > > Fidel > > > On 31-Jul-12, at 1:12 PM, Douglas N Greve wrote: > >> And there is nothing in /Applications/freesurfer/bin? Are there any >> files in the other directories? Do you have permission to install it >> in that location? If nothing is in the bin dir, then there is no need >> to try recon-all, it will always fail. >> doug >> >> >> >> On 07/31/2012 04:05 PM, Fidel Vila wrote: >>> Hi Doug, >>> >>> I re-installed freesurfer, and I still get the same error message >>> (terminal output attached); bin files are still missing from bin >>> folder. >>> >>> Shall I report this as a bug? >>> >>> Regards, >>> >>> Fidel >>> >>> >>> >>> >>> On 25-Jul-12, at 8:22 PM, Douglas Greve wrote: >>> >>>> did you set up your environment so that your path environment >>>> variable has all the proper paths in it? Look at the wiki for >>>> instructions. >>>> doug >>>> >>>> On 7/25/12 7:57 PM, Fidel Vila wrote: >>>>> Hi Freesurfer experts, >>>>> >>>>> I recently installed FS (PowerPC architecture version available on >>>>> FS website) on a Mac OS X 10.4.11 and I get the attached output >>>>> error when running recon-all. >>>>> >>>>> Advice on how to troubleshoot this would be appreciate. >>>>> >>>>> Thanks, >>>>> >>>>> Fidel >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> The information in this e-mail is intended only for the person to >>>> whom it is >>>> addressed. If you believe this e-mail was sent to you in error and >>>> the e-mail >>>> contains patient information, please contact the Partners >>>> Compliance HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to >>>> you in error >>>> but does not contain patient information, please contact the sender >>>> and properly >>>> dispose of the e-mail. >>>> >>> >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
