Yeah had 4/5 other processes going together, shall I just sort memory and re-do? Thanks for such a speedy response! Hugh
On 29 Aug 2012, at 12:35, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Looks like the careg died, probably because you ran out of memory. Was > anything else running on the machine? > > > > On Aug 28, 2012, at 10:17 PM, Hugh Pemberton <hughpembert...@gmail.com> wrote: > >> Hi Freesurfers, >> >> Have had this error come up after recon-all for a number of subjects and was >> wondering if you know what the issue is..? I have attached the recon-all.log >> too FYI. >> >> INFO: assuming .mgz format >> $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ >> $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ >> MRISread(/home/hughp/freesurfer/subjects/FAC/surf/lh.qsphere.nofix): could >> not open file >> reading input surface >> /home/hughp/freesurfer/subjects/FAC/surf/lh.qsphere.nofix... >> No such file or directory >> mris_fix_topology: could not read input surface >> /home/hughp/freesurfer/subjects/FAC/surf/lh.qsphere.nofix >> No such file or directory >> >> As the error suggests cannot read lh.qsphere, there is indeed nothing at all >> in the surf folder. >> Thanks for all your help, >> Hugh >> <recon-all.error> >> <recon-all.log> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
