The problem is that the fwhm is not-a-number (glmdir/fwhm.dat). Usually this means that there is something messed up with the mask (glmdir/mask.mgh). View the mask to see what is up tksurfer fsaverage lh inflated -ov glmdir/mask.mgh -fminmax .5 1 doug
On 11/01/2012 02:39 PM, Ryan wrote: > Doug, > Here are the files. > > > On Thu, Nov 1, 2012 at 2:00 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > Can you send the command line and attach the files? > thanks > doug > > > On 11/01/2012 01:11 PM, Ryan wrote: > > Doug, > I tried running mri_glmfit-sim without the --bg flag and it > finished in 10 minutes without any errors. This has never > happened before, so I highly suspect these results. Do you > know what could be wrong? In case you need it, the summary > file output and terminal output are attached. > > -Ryan > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > -- > -Ryan -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
