I am running the freesufer on ubuntu and working fine without any other configuration. I followed the configuration and it is simple http://mirko.windhoff.net/how_to/install_freesurfer_on_ubuntu azeez > From: dkim...@cw.bc.ca > To: freesurfer@nmr.mgh.harvard.edu > Date: Wed, 3 Oct 2012 13:03:49 -0700 > Subject: [Freesurfer] Configuring freesurfer developer's environment on > Ubuntu > > Hello freesurfer users! > > I've got a brand new PC with Ubuntu 12.04 64-bit running and following the > freesurfer developer's guide to set up a developer environment, I'm getting > numerous "undeclared function / undefined type" errors during make. > Seeing that the undeclared functions or variable types are actually defined > in .h files that are being declared correctly, I'm suspecting there's > configuration problem and was wondering has anyone had success in building > freesurfer on Ubuntu 12.04 64-bit or building freesurfer on any previous > Ubuntu release? > > The steps I took to get as far as getting undeclared function/undefined type > errors are: > > - Pre-built 3rd party libraries were downloaded and put into > /usr/pubsw/packages/ > > During configuration, I've made modification to bypass errors: > - changed configure script so that script will not end when libvtkfreetype, > libBLT is "not found" by the script, although, I have the .so files in the > correct library > - disabled -Werror flag > - copied /usr/bin/libtool into ~/dev/ in order to avoid libtool version > mismatch error > - In Makefile for ~/utils/ commented out any rules for > unwarpGradientNonLinearity since this file is no where to be seen > > Thank you for any advice and pointers! > > Danny Kim > BC Children's Hospital > > > Danny Kim > Children's Brain Mapping Centre > BC Children's Hospital > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
