Hello Martin, thanks for your answer, I used the --qcache. The cmd was:
long_mris_slopes --qdec qdecfile --meas thickness --hemi lh --do-avg --do-rate --do-pc1 --do-spc --do-stack --do-label --time months --fwhm 10 --qcache fsaverage --sd SUBJECTS_DIR All the bases subjects have the specific files after this cmd: lh.long.thickness-avg[pc1/rate/spc].fwhm0[5, 10, 15, 20, 25].fsaverage.mgh but the file that qdec asks for - is missing in all the bases subjects. Qdec asks for: lh.thickness ... but long_mris_slopes created: lh.long.thickness... it seems to be a qdec error ? maybe. btw, i changed the qdec.bin and qdeclibs.tgz with the last versions, from the release notes link. Also i used the last version of long_mris_slopes, from 2012/05/30. We work on mac leopard, but the recon-all -all / -base and -long was performed on linux (cluster). Sincerely, Alex. Le 09/11/2012 9:14 PM, Martin Reuter a écrit : > Hi Alex, > > check the bases of other subjects. Are there any fwhm????fsaverage > files? > > Did you run with the --qcache flag? Then these should have been created. > Maybe you passed a specific fwhm value different from 10? > > Best, Martin > > On Fri, 2012-11-09 at 17:13 -0500, Alex Hanganu wrote: >> Dear FreeSurfer Experts, >> >> we performed the long_mris_slopes cmd and finished without error. >> According to the "Longitudinal Processing Tutorial", we created after >> that the cross sectional form of the qdec table, and then the >> qdec/.Qdecrc file. >> >> When running the qdec analyses, we receive an error: >> >> Couldn't open ...subjects-base/surf/lh.thickness.fwhm.10.fsaverage.mgz >> or mgh file. >> >> The file is missing, it wasn't created. >> >> What did we miss ? >> >> Thanks, >> >> Sincerely, >> Alex. >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
