Emily,

This is good news, can I find or download this revised version somewhere?

jon
On Dec 14, 2012, at 11:37 AM, Emily Rogalski wrote:

> We ran into this issue frequently and found that it was resolved by using the 
> revised recon -all script that alters the stage where control points are 
> considered.
> 
> Emily
> 
> 
> On Wed, Dec 12, 2012 at 10:42 AM, Jonathan Holt <whats...@umich.edu> wrote:
> OK will do... I'll upload both versions, before and after recon-all ran. I am 
> beginning to think it's an issue with the script that I am running... I'm 
> looking at another brain and there are areas I did not touch at all where 
> white matter voxels are being added or removed...
> 
> 
> On Dec 12, 2012, at 11:33 AM, Bruce Fischl wrote:
> 
> > Hi Jon
> >
> > if you upload this subject we'll take a look
> > Bruce
> >
> >
> > On Wed, 12 Dec 2012, Jonathan Holt wrote:
> >
> >> I've had this happen a handful of times and I'm wondering what I can do 
> >> about it. For reference using Freesurfer 5.0.0.
> >>
> >> Edited a brain and ran "recon-all -autorecon2 -autorecon3 -s subj_id" 
> >> which completed without error. The resulting brain had chunks of missing 
> >> auxiliary volume in areas that I had not touched at all. This is bizarre 
> >> and I am not sure what to do about it. Images of said issue attached of 
> >> both main and auxiliary volumes.
> >>
> >>
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> > The information in this e-mail is intended only for the person to whom it is
> > addressed. If you believe this e-mail was sent to you in error and the 
> > e-mail
> > contains patient information, please contact the Partners Compliance 
> > HelpLine at
> > http://www.partners.org/complianceline . If the e-mail was sent to you in 
> > error
> > but does not contain patient information, please contact the sender and 
> > properly
> > dispose of the e-mail.
> >
> >
> >
> 
> 
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> 
> 
> 
> -- 
> Emily J Rogalski, PhD
> Assistant Research Professor
> Northwestern University
> Cognitive Neurology and Alzheimer's Disease Center (CNADC)
> 320 E Superior Street
> Searle Building 11th Floor
> Chicago, IL 60611
> 312-503-1155 phone
> 312-908-8789 fax
> erogal...@gmail.com
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> 
> 
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine 
> at
> http://www.partners.org/complianceline . If the e-mail was sent to you in 
> error
> but does not contain patient information, please contact the sender and 
> properly
> dispose of the e-mail.

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Reply via email to