OK this is great. Does this require the latest version of Freesurfer? I see recon-all v 5.2, we're running Freesurfer 5.0.0 for reference On Dec 14, 2012, at 1:16 PM, Alex Hanganu wrote:
> I think Emily is talking about this one: > > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/allplatforms/ > > a. > > > Le 14/12/2012 12:59 PM, Jonathan Holt a écrit : >> Emily, >> >> This is good news, can I find or download this revised version somewhere? >> >> jon >> On Dec 14, 2012, at 11:37 AM, Emily Rogalski wrote: >> >>> We ran into this issue frequently and found that it was resolved by using >>> the revised recon -all script that alters the stage where control points >>> are considered. >>> >>> Emily >>> >>> >>> On Wed, Dec 12, 2012 at 10:42 AM, Jonathan Holt <whats...@umich.edu> wrote: >>> OK will do... I'll upload both versions, before and after recon-all ran. I >>> am beginning to think it's an issue with the script that I am running... >>> I'm looking at another brain and there are areas I did not touch at all >>> where white matter voxels are being added or removed... >>> >>> >>> On Dec 12, 2012, at 11:33 AM, Bruce Fischl wrote: >>> >>> > Hi Jon >>> > >>> > if you upload this subject we'll take a look >>> > Bruce >>> > >>> > >>> > On Wed, 12 Dec 2012, Jonathan Holt wrote: >>> > >>> >> I've had this happen a handful of times and I'm wondering what I can do >>> >> about it. For reference using Freesurfer 5.0.0. >>> >> >>> >> Edited a brain and ran "recon-all -autorecon2 -autorecon3 -s subj_id" >>> >> which completed without error. The resulting brain had chunks of missing >>> >> auxiliary volume in areas that I had not touched at all. This is bizarre >>> >> and I am not sure what to do about it. Images of said issue attached of >>> >> both main and auxiliary volumes. >>> >> >>> >> >>> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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