Gari, In looking at this further, it seems like that 'with' statement and the dependency on python 2.5 is going to break a lot of systems. So we need to rewrite the script to not use it. In meantime, you can use aparcstats2table from v5.1 (even copy it to your 5.2 bin dir for now).
Thanks for catching this! Nick > Thanks Nick!! > is it a solution to run 5.2 aparcstats2table (Snow Leopard) in another > machine, accessing the data from a network drive? > > or is it a solution to run the aparcstats2table provided in 5.1 in the > same > machine, but accessing the data created by the 5.2 version? > > many thanks again for your help, > Gari > > > On Mon, Feb 11, 2013 at 5:02 PM, Nick Schmansky > <[email protected]>wrote: > >> Gari, >> >> A little googling tells me that the 'with' statement in python was >> introduced in python v2.5 in 2008, so unfortunately i think you'll have >> to >> update your python version, unless aparcstats2table can be rewritten to >> not use that statement. >> >> Nick >> >> >> > Hi Nick! >> > this is the version: >> > Centos 4 32b or 64b (x86_64) >> > (Linux cajal 2.6.18-164.15.1.el5 #1 SMP Wed Mar 17 11:30:06 EDT 2010 >> > x86_64 >> > x86_64 x86_64 GNU/Linux) >> > >> > >> > and the python version is: >> > Python 2.4.3 (#1, Feb 22 2012, 16:05:45) >> > [GCC 4.1.2 20080704 (Red Hat 4.1.2-52)] on linux2 >> > (python --version is not working) >> > >> > thanks! >> > Gari >> > >> > >> > >> > >> > On Mon, Feb 11, 2013 at 4:50 PM, Nick Schmansky >> > <[email protected]>wrote: >> > >> >> Gari, >> >> >> >> What OS are you running? is this the Centos 4 32b or 64b (x86_64)? >> >> >> >> can you tell me your python version? this way: >> >> >> >> python --version >> >> >> >> Nick >> >> >> >> >> >> > Hi fs experts, >> >> > I have this error every time I try tu run aparcstats2table : >> >> > >> >> > File "/home/glerma/fs/52/freesurfer/bin/aparcstats2table", line >> 221 >> >> > with open(o.qdec, 'rb') as f: >> >> > ^ >> >> > SyntaxError: invalid syntax >> >> > >> >> > >> >> > >> >> > it appears each time I run aparcstats2table, even when I write: >> >> > aparcstats2table --help >> >> > >> >> > >> >> > I have changed the environment variables in order to run the 5.1 >> >> version, >> >> > and it works as always. >> >> > >> >> > >> >> > What else should I check? >> >> > thanks! >> >> > Gari >> >> > _______________________________________________ >> >> > Freesurfer mailing list >> >> > [email protected] >> >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> >> >> >> >> The information in this e-mail is intended only for the person to >> whom >> >> it >> >> is >> >> addressed. If you believe this e-mail was sent to you in error and >> the >> >> e-mail >> >> contains patient information, please contact the Partners Compliance >> >> HelpLine at >> >> http://www.partners.org/complianceline . If the e-mail was sent to >> you >> >> in >> >> error >> >> but does not contain patient information, please contact the sender >> and >> >> properly >> >> dispose of the e-mail. >> >> >> >> >> > >> >> > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
