Thanks Doug and Nick, it works now, Gari
On Mon, Feb 11, 2013 at 9:16 PM, Nick Schmansky <[email protected]>wrote: > Gari, > > Can you try the attached fixed files? Both aparcstats2table and > asegstats2table were fixed. > > To install: > > cp stats2tab.tar $FREESURFER_HOME/bin > cd $FREESURFER_HOME/bin > tar xf stats2tab.tar > > Thanks again, > > Nick > > > On Mon, 2013-02-11 at 17:06 +0100, Garikoitz Lerma-Usabiaga wrote: > > Thanks Nick!! > > is it a solution to run 5.2 aparcstats2table (Snow Leopard) in another > > machine, accessing the data from a network drive? > > > > > > or is it a solution to run the aparcstats2table provided in 5.1 in the > > same machine, but accessing the data created by the 5.2 version? > > > > > > many thanks again for your help, > > Gari > > > > > > On Mon, Feb 11, 2013 at 5:02 PM, Nick Schmansky > > <[email protected]> wrote: > > Gari, > > > > A little googling tells me that the 'with' statement in python > > was > > introduced in python v2.5 in 2008, so unfortunately i think > > you'll have to > > update your python version, unless aparcstats2table can be > > rewritten to > > not use that statement. > > > > Nick > > > > > > > Hi Nick! > > > this is the version: > > > Centos 4 32b or 64b (x86_64) > > > (Linux cajal 2.6.18-164.15.1.el5 #1 SMP Wed Mar 17 11:30:06 > > EDT 2010 > > > x86_64 > > > x86_64 x86_64 GNU/Linux) > > > > > > > > > and the python version is: > > > Python 2.4.3 (#1, Feb 22 2012, 16:05:45) > > > [GCC 4.1.2 20080704 (Red Hat 4.1.2-52)] on linux2 > > > (python --version is not working) > > > > > > thanks! > > > Gari > > > > > > > > > > > > > > > On Mon, Feb 11, 2013 at 4:50 PM, Nick Schmansky > > > <[email protected]>wrote: > > > > > >> Gari, > > >> > > >> What OS are you running? is this the Centos 4 32b or 64b > > (x86_64)? > > >> > > >> can you tell me your python version? this way: > > >> > > >> python --version > > >> > > >> Nick > > >> > > >> > > >> > Hi fs experts, > > >> > I have this error every time I try tu run > > aparcstats2table : > > >> > > > >> > File > > "/home/glerma/fs/52/freesurfer/bin/aparcstats2table", line 221 > > >> > with open(o.qdec, 'rb') as f: > > >> > ^ > > >> > SyntaxError: invalid syntax > > >> > > > >> > > > >> > > > >> > it appears each time I run aparcstats2table, even when I > > write: > > >> > aparcstats2table --help > > >> > > > >> > > > >> > I have changed the environment variables in order to run > > the 5.1 > > >> version, > > >> > and it works as always. > > >> > > > >> > > > >> > What else should I check? > > >> > thanks! > > >> > Gari > > >> > _______________________________________________ > > >> > Freesurfer mailing list > > >> > [email protected] > > >> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >> > > >> > > >> > > >> The information in this e-mail is intended only for the > > person to whom > > >> it > > >> is > > >> addressed. If you believe this e-mail was sent to you in > > error and the > > >> e-mail > > >> contains patient information, please contact the Partners > > Compliance > > >> HelpLine at > > >> http://www.partners.org/complianceline . If the e-mail was > > sent to you > > >> in > > >> error > > >> but does not contain patient information, please contact > > the sender and > > >> properly > > >> dispose of the e-mail. > > >> > > >> > > > > > > > > > > > > >
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