Hi Stefano - What are the contents of the bedpostX output directory? In your case, that'd be this directory:
/Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX
a.y On Mon, 11 Feb 2013, std...@virgilio.it wrote:
Hi list, I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject but I have this error: Loading mask from /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX niiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz ERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html I'm deducing that the error may be related trace-all upload. I have doing this upload but I visualize always the same error. I attached tract-all uploades file that live in /Applications/freesurfer/bin. Please, could you check it? I have also other question. May I run the second step of trac-all (bedpostx) using FSL on other pc? In this way, could I directly run in FSL dmri folder? Do you think that I should rename some files? Thanks, Stefano
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