Hi bruce, I want cortical thickness, total surface area, instrinsec curvature index and folfing index. VP
Date: Wed, 20 Mar 2013 13:09:54 -0400 From: fis...@nmr.mgh.harvard.edu To: pval...@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Brainsuite --> FreeSurfer it depends on what measures you want Bruce On Wed, 20 Mar 2013, Valtina Pouegue wrote: > Hi Bruces, > It's because i'm doing a comparison between brainsuite and freesrufer. So , I > would like to export results of > segmentation with Brainsuite and make measurements with FreeSurfer. In Fact, > with freesurfer I can have more parameters > than with freesurfer. > Does it exist another way for get measurements with surfaces ( not generated > by Freesurfer)? > Thx . > > VP > Date: Wed, 20 Mar 2013 08:38:26 -0400 > From: fis...@nmr.mgh.harvard.edu > To: pval...@hotmail.com > CC: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Brainsuite --> FreeSurfer > > Hi Valtina > > you can try opening it with freeview if all you want is visualization. If > you are trying to produce anatomical stats you will need a lot more than > just the pial surface, as mris_anatomical_stats computes many things from > an array of inputs (such as the wm.mgz, the aseg.mgz, etc....). Why not > just run recon-all and generate them? > Bruce > > > On Tue, 19 Mar 2013, Valtina Pouegue wrote: > > > I could see the created surface in MAtlab ( 'read_surf,) but I could't > > open the file in Freesurfer with tksurfer.... > > > > VP > > > > _______________________________________________________________________________________________________________________ > __ > > From: pval...@hotmail.com > > To: freesurfer@nmr.mgh.harvard.edu > > Subject: Brainsuite --> FreeSurfer > > Date: Tue, 19 Mar 2013 22:34:39 -0400 > > > > Hi, > > > > I've done a segmentation with Brainsuite ( and FreeSurfer) and I would like > > to get measurements with FreeSurfer. SO, I > > convert my rile ( readdfs --> write_surf ) from BRainsuite in Matlab to be > > usable with Freesurfer. Then, I tried to get > > measurements with the command .'mris_anatomical_stats' . with the file > > created previously in Matlab (I called it > > 'rh.pial'). But I got this error like the system is not able to read > > wm.mgz. > > That's why I thought I could juste replace th 'rh.pial' of the segmentation > > with Freesurfey by the 'rh.pial' created wi > th > > Matalb and then run mris_anatomical_Stats. IS this a good approximation. > > Could you recommand another way. > > > > > > VP > > > > > > _______________________________________________ Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information > in this e-mail is intended only for the > person to whom it is addressed. If you believe this e-mail was sent to you in > error and the e-mail contains patient > information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail > was sent to you in error but does not contain patient information, please > contact the sender and properly dispose of the > e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
