it depends on what measures you want
Bruce
On Wed, 20 Mar 2013, Valtina Pouegue
wrote:
Hi Bruces,
It's because i'm doing a comparison between brainsuite and freesrufer. So , I
would like to export results of
segmentation with Brainsuite and make measurements with FreeSurfer. In Fact,
with freesurfer I can have more parameters
than with freesurfer.
Does it exist another way for get measurements with surfaces ( not generated by
Freesurfer)?
Thx .
VP
Date: Wed, 20 Mar 2013 08:38:26 -0400
From: fis...@nmr.mgh.harvard.edu
To: pval...@hotmail.com
CC: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Brainsuite --> FreeSurfer
Hi Valtina
you can try opening it with freeview if all you want is visualization. If
you are trying to produce anatomical stats you will need a lot more than
just the pial surface, as mris_anatomical_stats computes many things from
an array of inputs (such as the wm.mgz, the aseg.mgz, etc....). Why not
just run recon-all and generate them?
Bruce
On Tue, 19 Mar 2013, Valtina Pouegue wrote:
> I could see the created surface in MAtlab ( 'read_surf,) but I could't open
the file in Freesurfer with tksurfer....
>
> VP
>
> _______________________________________________________________________________________________________________________
__
> From: pval...@hotmail.com
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Brainsuite --> FreeSurfer
> Date: Tue, 19 Mar 2013 22:34:39 -0400
>
> Hi,
>
> I've done a segmentation with Brainsuite ( and FreeSurfer) and I would like to get measurements with FreeSurfer. SO, I
> convert my rile ( readdfs --> write_surf ) from BRainsuite in Matlab to be
usable with Freesurfer. Then, I tried to get
> measurements with the command .'mris_anatomical_stats' . with the file
created previously in Matlab (I called it
> 'rh.pial'). But I got this error like the system is not able to read wm.mgz.
> That's why I thought I could juste replace th 'rh.pial' of the segmentation
with Freesurfey by the 'rh.pial' created wi
th
> Matalb and then run mris_anatomical_Stats. IS this a good approximation.
Could you recommand another way.
>
>
> VP
>
>
_______________________________________________ Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in
this e-mail is intended only for the
person to whom it is addressed. If you believe this e-mail was sent to you in
error and the e-mail contains patient
information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail
was sent to you in error but does not contain patient information, please
contact the sender and properly dispose of the
e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
