mri_vol2vol or mri_convert can apply the .m3z. RB_all_2008-03-26.gca contains more info than just the means, but we do construct it to be approximately in the MNI space, and part of it can be visualized when you mri_convert it to a volume format (the mean intensity of the most probable label)
Did you read the help for mri_cvs_register? It's pretty extensive (thanks Lilla!) Bruce On Thu, 21 Mar 2013, martina.andell...@fastwebnet.it wrote: > Hi FreeSurfer experts, > I would need to use the registration tools in freesurfer because the fsl ones > ga > ve me some problem. > Just to try I have run mri_ca_registration and mri_cvs_registration and so I > hav > e three questions: > > > 1) mri_ca_registration generates a talairach tansform file in .m3z format and I > would need to apply it to my high res image. Any hint? > 2) Converting RB_all_2008-03-26.gca to nii and opening it to mricron it seems to > superimposable to the mni atlas. does it mean that what it comes out from mri_c > a_registration coincides to an mni atlas image? > 3) Running mri_cvs_registration (on bert data...just to try) I do not know where > to find the registered volume file (I have tried few volume .mgz but with no su > ccess...). Should i look for a transform file too? > > > > Thanks so much! > Martina > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
