Hi Martina, What was the command that you ran when executing mri_cvs_register. The default outpur directory is $SUBJECTS_DIR/$subject/cvs. The help alos explains how you can change that directory.
--Lilla On Thu, 21 Mar 2013, Bruce Fischl wrote: > mri_vol2vol or mri_convert can apply the .m3z. > > RB_all_2008-03-26.gca contains more info than just the means, but we do > construct it to be approximately in the MNI space, and part of it can be > visualized when you mri_convert it to a volume format (the mean intensity > of the most probable label) > > Did you read the help for mri_cvs_register? It's pretty extensive (thanks > Lilla!) > > Bruce > > > On Thu, 21 Mar 2013, martina.andell...@fastwebnet.it wrote: > >> Hi FreeSurfer experts, >> I would need to use the registration tools in freesurfer because the fsl >> ones ga >> ve me some problem. >> Just to try I have run mri_ca_registration and mri_cvs_registration and so I >> hav >> e three questions: >> >> >> 1) mri_ca_registration generates a talairach tansform file in .m3z format > and I >> would need to apply it to my high res image. Any hint? >> 2) Converting RB_all_2008-03-26.gca to nii and opening it to mricron it > seems to >> superimposable to the mni atlas. does it mean that what it comes out from > mri_c >> a_registration coincides to an mni atlas image? >> 3) Running mri_cvs_registration (on bert data...just to try) I do not > know where >> to find the registered volume file (I have tried few volume .mgz but with > no su >> ccess...). Should i look for a transform file too? >> >> >> >> Thanks so much! >> Martina >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
