Does 5.3 assume recon-all -all will always run first? Since ribbon.mgz will not get created till autorecon3. In V4, that is part of autorecon2 though.
Gen On Thu, May 30, 2013 at 12:24 AM, Mehul Sampat <mpsam...@gmail.com> wrote: > ps: i believe my error is the same as the one in this thread: > > http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg28047.html > > > Mehul > > > On Thu, May 30, 2013 at 12:13 AM, Mehul Sampat <mpsam...@gmail.com> wrote: > >> Hi Folks, >> I am running recon-all with -autorecon1 -autorecon2, -nomotioncor >> -notal-check -nonuintensitycor >> (this is with fs version 5.3) >> it almost runs through but toward the end, when mri_segstats is called I >> get the error message: >> >> .../mri/ribbon.mgz, -1): could not open file >> any ideas why this could be occurring ? >> Thanks >> Mehul >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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