Hi Subha, use mri_segstats, something like

mri_segstats --i norm.mgz -seg arcfas.mgz -id 1 -sum arcfas.summary.dat
Look at the --help for more info
doug


On 05/30/2013 07:04 AM, Subhabrata Chaudhury wrote:
> Hello Everyone,
> Greetings.
> I am learning freesurfer tricks. I am stuck and have a question.
> I have run 10 subjects through freesurfer. I have made custom volume 
> regions for arcuate fasciculus for 10 subjects. Now I want to get some 
> measurements inside this region.
> How do I get the volume of the region ?
> How do I get the mean T1 intensity in this region ?
> Can somebody share some script or point me to some script ?
> Will be very thankful.
> Subha
>
>
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MGH-NMR Center
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