Hi Subha, use mri_segstats, something like mri_segstats --i norm.mgz -seg arcfas.mgz -id 1 -sum arcfas.summary.dat Look at the --help for more info doug
On 05/30/2013 07:04 AM, Subhabrata Chaudhury wrote: > Hello Everyone, > Greetings. > I am learning freesurfer tricks. I am stuck and have a question. > I have run 10 subjects through freesurfer. I have made custom volume > regions for arcuate fasciculus for 10 subjects. Now I want to get some > measurements inside this region. > How do I get the volume of the region ? > How do I get the mean T1 intensity in this region ? > Can somebody share some script or point me to some script ? > Will be very thankful. > Subha > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.