Anna, if you need to get it back into the native anatomical space, see
http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
You can use nii as the output format instead of mgz
doug
On 5/31/13 7:23 AM, Anna Josefson wrote:
Dear FreeSurfer users!
I am new to Freesurfer, and I have succesfully managed to run
recon-all on my data, for every subject.
Now I plan to use the output - some of the different cortical and
subcortical brain structures as ROI's in my SPM analyses.
Then I would have to convert from freesurfer space to SPM space via
the coordinates.
And - I would also have to convert from .mgz to .nii data format.
Does any have any tips on how to do this? Or a script?
Kind Regards,
Anna B. Josefson
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