Hi Ye, one of the programs expects that recon-all will be run all the way through instead of in parts. You will need to download a new version of mri_segstats from
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.centos6 ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.snowleopard Copy the file appropriate for your architecture to $FREESURFER_HOME/bin/mri_segstats doug On 07/02/2013 11:31 AM, ye tian wrote: > Dear freesurfers, > > Recon-all -s subject -autorecon2 returns the following error messages > > *mri_segstats will not calculate Supratentorial due to missing > ribbon.mgz file* > > mghRead(Path_to_subject/mri/*ribbon.mgz, -1)*: could not open file. > > Prior to autorecon2, I did recon-all -s subject -autorecon1, which > completed without errors. > > I found a similar problem in the archive, > > https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-May/030025.html > > and I will follow the suggestion given. In the same time, does anybody > know what is going wrong? > > Thank you very much! > > Sincerely, > Ye > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
