Hi Jeff, If you run recon-all on your individual subjects, it would have automatically generate the registration files (?h.sphere.reg) to fsaverage. Doug's reply about mri_surf2surf should work. You just need to apply mri_surf2surf separately for the left and right annots.
Cheers, Thomas On Sun, Jul 14, 2013 at 10:27 PM, Jeff Eriksen <eriks...@ohsu.edu> wrote: > Bruse, > > I apologize, I thought you were answering another question that I had > submitted, which I had foremost in my mind. I will look at mri_label2label > in more detail now in the proper context. > > Thanks, > -Jeff > > On 7/13/13 11:31 AM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: > > >Hi Jeff > >mri_label2label should do what you want > >Cheers > >Bruce > > > >On Jul 12, 2013, at 6:45 PM, Jeff Eriksen <eriks...@ohsu.edu> wrote: > > > >> I have the Yeo resting-state fMRI atlases which I downloaded from > >> > >> http://www.freesurfer.net/fswiki/CorticalParcellation_Yeo2011 > >> > >> They consist of 3 versions, fsaverage being of interest here. The > >> fsaverage folder provided includes the typical FS folders corresponding > >>a > >> recon-all for the average brain for this atlas. I wish to use this high > >> resolution atlas to parcellate my individual subjects. I am unclear how > >>to > >> go about this. I have perused wiki pages on > >> > >> Annotation files > >> FS labels > >> Automatic surface labeling process > >> Surface registration process > >> > >> but still do not find a clear path to my goal. Specifically I would like > >> to end up with a matching set of surface and annot files, as high of > >> resolution as possible, for each of my subjects. Using some specific > >> numbers, the Yeo atlas has around 300,000 vertices when combining the > >> lh.pial and rh.pial surfaces. The matching annot files I believe are > >> l&rh.Yeo2011_17Networks_N1000.annot, which together should also have > >> 300,000 vertices. I suppose what I need to do is align each of my > >>subjects > >> to this atlas and project the atlas onto each subject to get a new > >>surface > >> and annot file for that subject, which will have some unique number of > >> vertices for each subject. > >> > >> Please point me to the right set of documentation that will tell me how > >>to > >> do this. Thanks, > >> > >> -Jeff > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > > > > > >The information in this e-mail is intended only for the person to whom it > >is > >addressed. If you believe this e-mail was sent to you in error and the > >e-mail > >contains patient information, please contact the Partners Compliance > >HelpLine at > >http://www.partners.org/complianceline . If the e-mail was sent to you in > >error > >but does not contain patient information, please contact the sender and > >properly > >dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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