Please attach the file trac-all.log. I can't tell what's going on just by
looking at the end of it.
On Wed, 7 Aug 2013, Alan Francis wrote:
Thank you Anastasia. Another brain had a different problem: Here is the
trac-all log:
mri_concat --i
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/dwi_frame.nii.gz
--mean --o
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/lowb.nii.gz
niiRead(): error opening file
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/dwi_frame.nii.gz
ninputs = 1
Checking inputs
ERROR: reading
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/dwi_frame.nii.gz
Linux cerebro 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013
x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS at Wed Aug 7 13:01:21 EDT 2013
thanks so much,
Alan
On Wed, Aug 7, 2013 at 1:11 PM, Anastasia Yendiki
<ayend...@nmr.mgh.harvard.edu> wrote:
Hi Alan - Try removing the "\" character from the end of the dcmlist
definition. That's a change of line
character.
a.y
On Wed, 7 Aug 2013, Alan Francis wrote:
Hi Anastasia:
Here is the trac-all log. Please find attached the dmrirc file.
csh::alanf@cerebro
[/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons]
: trac-all
-prep
-c
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/dmrirc-107
Too many ('s.
ERROR: must specify as many DWI dicoms as subjects
Thank you so much.
Alan
On Wed, Aug 7, 2013 at 12:32 PM, Anastasia Yendiki
<ayend...@nmr.mgh.harvard.edu> wrote:
Yes, please attach the dmrirc and trac-all.log. Thanks!
a.y
On Wed, 7 Aug 2013, Alan Francis wrote:
Hi Anastasia:
For one brain I got this error message :
csh::alanf@cerebro
[/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons]
: trac-all
-prep
-c
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/dmrirc-107
Too many ('s.
ERROR: must specify as many DWI dicoms as subjects
I tried specifying the exact number of DWI dicoms but
it is not working. Should I
send you my
dmrirc for this brain?
thanks,
Alan
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