fsaverage is already part of the distribution. I don't understand from your email what the problem is. doug
On 10/21/2013 10:03 AM, car...@van-vlodrop.de wrote: > > Hi Doug, > > > I have already run: > > > recon-all -s subject -qcache -target avgsubject for each subject > > > Is it the same file? > > I am not sure if the brain is really created or if there is a problem > in uploading the brain in qdec. > > Is it possible to get the fsaverage brain from freesurfer to check the > cause of the problem? > > > Thank you > > Carina > > > > > >> ----- Ursprüngliche Nachricht ----- >> Von: Douglas Greve >> Gesendet: 28.09.13 17:46 Uhr >> An: freesurfer@nmr.mgh.harvard.edu >> Betreff: Re: [Freesurfer] Problem in final analysis >> >> Hi Carina, run >> >> recon-all -s subject -qcache >> >> for each subject and this will create the file >> >> doug >> >> >> >> >> >> On 9/28/13 5:37 AM, car...@van-vlodrop.de wrote: >> >> Dear freesurfer community, we are conducting cortical-thickness >> analysis using freesurfer-4.4.0 and have been experiencing some >> problems with the final analysis steps. We are using the qdec. >> Uploading of the data table has been successful. When we try to >> use the “Analyze” command (design) in the qdec, we get the >> following error message: Error in Analyze: Couldn’t open file >> >> /data/projects/oertelmatura/Neurodegeneration/AJ83/surf/lh.thickness.fwhm10.fsaverage.mgh >> Obviously, the file was never created during preprocessing. We >> wonder, how to create dir/lh.thickness.fwhm10.fsaverage.mgh and >> would be very grateful for your comments. Yours sincerely, Carina >> $ bugr FREESURFER_HOME: /apps/prod/i486/freesurfer-4.4.0 Build >> stamp: freesurfer-Linux-centos4-stable-pub-v4.4.0 Debian version: >> 5.0.6 Kernel info: Linux 2.6.27.39- 1 –ql-beowulf i686 $ which >> surfer -> /apps/prod/i486/freesurfer-4.4.0/bin/freesurfer Used >> command: qdec/design/Analyze Error message: Error in Analyze: >> Couldn’t open file >> >> /data/projects/oertelmatura/Neurodegeneration/AJ83/surf/lh.thikness.fwhm10.fsaverage.mgh >> >> >> >> _______________________________________________ Freesurfer >> mailing list Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
