see if the talairach.lta looks reasonable
On Fri, 17 Jan 2014, Mark Plantz wrote:
Hi Bruce,
The nu.mgz file looks OK to me (I also attached a picture). When I
opened the talairach with "tkregister2" everything looked ok, except I
couldn't get the green lines from the original surface to show (even after
pressing 's' in the viewing window). Anyways, since these two files seem to
be OK, do you think it is an atlas issue?
Thank you!
- MP
On Thu, Jan 16, 2014 at 7:36 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Mark
does the input to mri_ca_normalize look ok (the nu.mgz)? Is the
talairach.xfm ok?
Bruce
On Thu, 16 Jan 2014, Mark Plantz wrote:
Hello freesurfers,
I am running into a problem during the "CA
Normalize" sequence of
autorecon-2. It looks like freesurfer is having a
hard time creating control
points based off the atlas I am using. The output is
as follows:
"finding control points in
<Left_Cerebral_White_Matter>...found 0 control
points"
This repeated for the other various regions
included in the atlas. The
only control points found were "168 control points"
in the
"Right_Cerebral_White_Matter". Could this possibly
be an alignment issue? If
so, is there an easy way to check the alignment?
Thank you,
Mark
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